CN186279

Overview
NameCN186279
Unique NameCN186279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186279_ssr445 microsatellite CN186279_ssr445:445..459. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10187 contig Csv1_Contig10187:83..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186279 vs. ExPASy Swiss-Prot
Match: SUMO1_DANRE (Small ubiquitin-related modifier 1 OS=Danio rerio GN=sumo1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.310e-15
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = -1 
Query:  174 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 404
            +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V +NS+ FLF+G+R+    TP EL MED D I+    QTGG
Sbjct:   20 YIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVPVNSLRFLFEGQRITDNLTPKELGMEDEDVIEVYQEQTGG 96
[Close]
BLAST of CN186279 vs. ExPASy Swiss-Prot
Match: SUMO1_ONCMY (Small ubiquitin-related modifier 1 OS=Oncorhynchus mykiss GN=sumo1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.941e-15
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = -1 
Query:  174 EEDKKPVDQSA-------HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 437
            + D KP  Q         +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V ++++ FLF+G+R+    TP EL MED D I+    QTGG
Sbjct:    3 DTDTKPSGQDGGDQKDGEYIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVHMSTLRFLFEGQRISDNHTPKELGMEDEDVIEVYQEQTGG 97
The following BLAST results are available for this feature:
BLAST of CN186279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_DANRE2.310e-1550.65Small ubiquitin-related modifier 1 OS=Danio rerio ... [more]
SUMO1_ONCMY3.941e-1543.16Small ubiquitin-related modifier 1 OS=Oncorhynchus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002K11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186279 ID=CN186279; Name=CN186279; organism=Citrus sinensis; type=EST; length=518bp
TTTTTTTTTTTTTTTGATAATAAACCATGACTTAAATTCAAGTTAACTAT
AAGATCCAAGTCATCATTTACAGTAATATTTCCATAGATATAGGCTAATT
TAAAAAACTCAAACATCAAGTCCGCCAGCGATGCTCTAAATATTTCACAC
TGCAGTTAACCGCTTCCAAGCGCACCTCCAGTCTGATGCAGCATTGCATC
AATTTCATCTCCATCCTCCATCTCAAGCTCATCTGGAGTCTGCTCTCCTC
GGAGTCTCCGCCCATCAAACAAGAAAGCAATAGAGTTTAACTCCACCGAC
TGCCGATCACAGTAGGCATTCATGAGCTTTTTCAACTGGGTGCTTCGCTT
AATTCTAAAAAACACCTCATTGCCATCCTGGCCCTTGACTTTGAGGTTAA
TGTGCGCCGACTGATCGACGGGCTTCTTGTCCTCCTCCTGACCACCGCCG
CCGCCGCCGCCACCACCAGTTGCTGACATCCTTACAGGTTGTTAGAATTG
AATTTTACCCTCTCTCCT
back to top