CN186277

Overview
NameCN186277
Unique NameCN186277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5017 contig Csv1_Contig5017:34..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 3.241e-47
Identity = 102/223 (45.74%), Postives = 148/223 (66.37%), Query Frame = -2
Query:  132 NLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 800
            +L  EM  L E F+++YLG H+GR+L WQT +G A +KA F +G+K E  VS +Q  VL++FN  D  S+ EI+ AT I  S+L+R LQSLAC + + VL K P  K++ + D F  N +F  K +++KI   +  KE+  E+  T +RV +DR+ QI+AAIVRIMK R+ L HN +++E+  QL  +F   P ++KKRIESLI+RD++ERD  +   Y Y+A
Sbjct:  542 HLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKK-EFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKAR-VLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQ-IQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQL--KFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.904e-39
Identity = 94/227 (41.41%), Postives = 136/227 (59.91%), Query Frame = -2
Query:  132 SVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 812
            S   NLP+EM    E F+ +Y      R+L+W  ++G+  I   F + +  EL VSTYQ  VL+LFN  D+LSY EI     +   DL R L SL+C + K +L KEP +K + ++DAF  N KFT +  ++KI           E+++  + V++DR+  I+AAIVRIMKSR+VL H  +++E  +QL   F  +   IKKR+E LI RD+LERD  +  ++RYLA
Sbjct:  519 SFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQ-KAIELIVSTYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKYK-ILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVD-----ERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL4_SCHPO (Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.390e-36
Identity = 80/230 (34.78%), Postives = 139/230 (60.43%), Query Frame = -2
Query:  135 PSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNA---DRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYL 815
            P     LP +M    + F  +YL    G+++SW  ++G   +KA F  G K EL++S +Q CVL+ FNN    + +SY++++++TE+   DL R LQSL+C R + ++   P SK    D  F+VN+KFT K Y+VKI  +   KE   E  + +++V  DR+ +++A+IVR+MK +  + H++++  V   ++ R +   +++K  IE L+E+++LER+  D  +Y Y+
Sbjct:  509 PESHIRLPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLGNK-ELSISLFQACVLLQFNNCLGGEGISYQDLKKSTELSDIDLTRTLQSLSCARIRPLVMV-PKSKKPSPDTMFYVNEKFTDKLYRVKINQIYL-KEERQENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLERE--DNDIYTYV 733          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL2_PONAB (Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.179e-35
Identity = 83/228 (36.40%), Postives = 141/228 (61.84%), Query Frame = -2
Query:  132 PSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 815
            PS T  +P E+    + F  +Y    +GR+L+W   + + ++K  +  G+ +   V+TYQM VL+ FNN++ +SY+E++ +T++   +L + ++SL  V+   ++  +   +DI  + +F +N  F+SK  K KI T + QK++  E ++TR  V+EDRK  ++AAIVRIMK+R+VL HN +I EV  Q ++RF  + + IKK IE LI++ ++ER       Y Y+A
Sbjct:  523 PSSTFAIPQELEKSVQMFELFYSQHFSGRKLTWLHYLCTGEVKMNY-LGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLLDVK---MINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSM-QKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL2_HUMAN (Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.179e-35
Identity = 83/228 (36.40%), Postives = 141/228 (61.84%), Query Frame = -2
Query:  132 PSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 815
            PS T  +P E+    + F  +Y    +GR+L+W   + + ++K  +  G+ +   V+TYQM VL+ FNN++ +SY+E++ +T++   +L + ++SL  V+   ++  +   +DI  + +F +N  F+SK  K KI T + QK++  E ++TR  V+EDRK  ++AAIVRIMK+R+VL HN +I EV  Q ++RF  + + IKK IE LI++ ++ER       Y Y+A
Sbjct:  523 PSSTFAIPQELEKSVQMFELFYSQHFSGRKLTWLHYLCTGEVKMNY-LGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLLDVK---MINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSM-QKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL2_MOUSE (Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.846e-35
Identity = 83/228 (36.40%), Postives = 141/228 (61.84%), Query Frame = -2
Query:  132 PSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 815
            PS T  +P E+    + F  +Y    +GR+L+W   + + ++K  +  G+ +   V+TYQM VL+ FNN++ +SY+E++ +T++   +L + ++SL  V+   ++  +   +DI  + +F +N  F+SK  K KI T + QK++  E ++TR  V+EDRK  ++AAIVRIMK+R+VL HN +I EV  Q ++RF  + + IKK IE LI++ ++ER       Y Y+A
Sbjct:  523 PSSTFAIPQELEKSVQMFELFYSQHFSGRKLTWLHYLCTGEVKMNY-LGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLLDVK---MINHDSEKEDIDAESSFSLNMSFSSKRTKFKITTSM-QKDTPQELEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.154e-34
Identity = 89/262 (33.97%), Postives = 139/262 (53.05%), Query Frame = -2
Query:  132 PSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNA---DRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMS-------------------------------KDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 815
            P +   LP E     E F  +YL  H G+ L WQ  +    +KA F +G+K EL+VS +Q  +L LFN+      LS+R+I+  T +   +LK+ L SL   +   +++K+  +                               K I E D F  N KF+SK +K+K+ ++  Q+  E E Q+T + +  DR+ Q++AAIVRIMK+R+ L HN +I+E+   L  +F   P ++KKRIE LIE+++L RD  +  +Y Y+A
Sbjct:  545 PPIEATLPKEFLEYQEVFNKFYLSKHNGKTLKWQNALSYCVLKANFIQGKK-ELSVSLFQTIILYLFNDVIDGGELSFRDIQANTGLAIPELKKNLLSLCSSKSDILIQKKSSTSSNTSSNTSSNTSSSASGSASGGASGGATKTKVIDETDTFLFNSKFSSKLFKIKVNSIQIQETVE-ENQKTNENIISDRQYQVDAAIVRIMKTRKTLAHNLLISELVSLL--KFQPKPVDLKKRIEILIEKEYLCRDPENAMIYNYMA 802          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL1_DICDI (Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.252e-31
Identity = 85/231 (36.80%), Postives = 134/231 (58.01%), Query Frame = -2
Query:  132 PSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQK--HELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMS-KDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 815
            PS   ++P E+ A  + F+ +Y   H+GR+L+W  ++   ++K  + +  K  + L  STYQ+ VL+ FN  + L+  EI+++T++  S LK  L SLA  + K +L   P+  ++I +   F +N +F +K  K+ I   V  +  E E     + VEEDRK QI+AAIVRIMK R+ L H+ ++ EV  QLQ+RF      IKK I+ LIE+++L R    +  Y Y+A
Sbjct:  543 PSTNFSIPKELQACEQLFQKFYQNQHSGRKLNWLHHLSKGELKTKYLQTSKSGYTLQCSTYQIGVLLQFNQYETLTSEEIQESTQLIDSVLKGTLTSLA--KSKILLADPPLDDEEIAKTTKFSLNKQFKNKKTKIFINVPVLTQVKE-EIDSIHKTVEEDRKLQIQAAIVRIMKMRKQLAHSGLMTEVISQLQTRFNPKVNIIKKCIDILIEKEYLMRVEGKKDHYSYVA 770          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL1_SCHPO (Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.333e-29
Identity = 77/226 (34.07%), Postives = 130/226 (57.52%), Query Frame = -2
Query:  144 SVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQK--HELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFF-VNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLY 812
            +V  +LP E+  L E F++YY   H GR+LSW  ++   +IKA         +   VSTYQM VL+L+N+ D  +Y E+ + T +    L   L     ++ K +L  +  +  +G+ ++ + +N+ F  K  +V++   + + E + E  ET + +EEDRK  +++AIVRIMK+RR L H  ++ E   Q++SRF    ++IK+ I+ LIE+++LER   D  +Y
Sbjct:  545 NVNFHLPEELVPLYEGFQNYYYSCHNGRKLSWLFHLSKGEIKARINPQTNVTYVFQVSTYQMGVLLLYNHRDSYTYEELAKITGLSTDFLTGILNIF--LKAKVLLLGD--NDKLGDPNSTYKINENFRMKKIRVQLNLPI-RSEQKQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVVLVKETIDQIKSRFTPKVSDIKQCIDMLIEKEYLERQGRDEYIY 765          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL4_CAEEL (Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 6.788e-29
Identity = 79/233 (33.91%), Postives = 130/233 (55.79%), Query Frame = -2
Query:  132 NLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCL----------QSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 800
            N+P EM      ++ +Y   H  R + W   + SA I A+F  G K EL  + YQ  +L+LFN  +  +  EI + T+I   ++ + +          + L  V G    +KE   +++ +++ F VN KFT K  +V+I  V   K +  E +E ++ V  DR+ +I+AA+VRIMK+R+ L+H  ++ E+ +QL  RF  +  +IKKR+ESLIER+++ RD  +   Y Y+A
Sbjct:  612 NIPKEMRDTLTDYQDFYRVQHGNRNVKWHHGLASAVISASFRPGCKKELIATMYQTVILLLFNKCETWTVAEIVEHTKILEIEVVKNVLALLGGRDKPKVLQRVEGGGSEKKEGTVENL-KNEKFVVNSKFTEKRCRVRIAQVNI-KTAVEETKEVKEEVNSDRQYKIDAAVVRIMKARKQLNHQTLMTELLQQL--RFPVSTADIKKRLESLIEREYISRDPEEASSYNYVA 840          
The following BLAST results are available for this feature:
BLAST of CN186277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CUL4A_HUMAN3.241e-4745.74Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL1_ARATH1.904e-3941.41Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL4_SCHPO4.390e-3634.78Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1... [more]
CUL2_PONAB2.179e-3536.40Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1[more]
CUL2_HUMAN2.179e-3536.40Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2[more]
CUL2_MOUSE2.846e-3536.40Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2[more]
CUL4_DICDI9.154e-3433.97Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ... [more]
CUL1_DICDI4.252e-3136.80Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 ... [more]
CUL1_SCHPO2.333e-2934.07Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1... [more]
CUL4_CAEEL6.788e-2933.91Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186277 ID=CN186277; Name=CN186277; organism=Citrus sinensis; type=EST; length=816bp
TTTTTTTTCTTGAACCAACTGAGATTGCAGAATTTGTAAAACAATTTTCG
ACTTACCAACTAACGTACAAATTGAATTGTTTGTGCTAAACTTTCCTCAA
GAAACAAGTAATCTTCTCATGCCAATCTTTAGGCAAGATACCGATACAAT
TTTCTGTCTACATTATCCCTCTCCAAGAAATCCCTTTCAATGAGGGACTC
AATCCGTTTTTTAATCTCCGTGGGGTTTGCCAGAAACCGTGACTGCAACT
GCTTTGTGACCTCAGCAATTATGTTGTTATGATCGAGTACTCTCCTTGAT
TTCATGATTCTAACGATGGCAGCTTCAATCTGAGGCTTCCTGTCCTCCTC
CACTCTTTGCCGAGTTTCCTGTTTCTCTGGTTCTGACTCCTTTTGTGCAA
CCACAGTTCCTATCTTTACCTTATAGAATTTGCTCGTGAACTTGTCATTG
ACAAAGAATGCATCATCTTCACCAATGTCTTTACTCATGGGTTCTTTCCG
AAGAACATTCTTCCCCCTCACACAAGCCAGAGATTGCAGGCACCTTTTCA
AGTCTGAAGCAGGAATCTCTGTTGCCTGCTCTATTTCCCGGTAGCTAAGC
CGATCAGCGTTGTTAAACAGCATGAGAACACACATTTGGTATGTGGAGAC
ATTCAGCTCATGCTTCTGACCTTTACCAAAGGTTGCCTTTATATCTGCTG
AGCCCATGTTGGTTTGCCAGGACAATCTCCGACCAGTATGAGTTCCAAGG
TAGTATGATCTAAATTTCTCACACAGAGCTGACATTTCGGCTGGCAGGTT
GCAAGTAACACTAGGC
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