CN186277

Overview
NameCN186277
Unique NameCN186277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5017 contig Csv1_Contig5017:34..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL5_DICDI (Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.866e-29
Identity = 75/227 (33.04%), Postives = 127/227 (55.95%), Query Frame = -2
Query:  132 PAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVA---QKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLER---DNVDRKLYRYLA 794
            P+EM +    F S+Y  ++ GR L++  +   AD+ +   KG+ ++L  + YQM +L++FN AD+++   I     +  + ++  L  LA ++   +   EP  K+   D  F VN KF+SK  KV     V     K+SE ++  + Q +E++R  +++AAIVRIMKS++ + HN++  E T Q+   F    T IKK IE LI+++++ R   DN   + Y Y+A
Sbjct:  526 PSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGKIYKLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSIR--LPLLALIKTGIIECSEPSFKNWNNDTEFTVNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVRIMKSKKTMTHNDLTVETTTQVSKWFTPKITAIKKAIEYLIDQEYIRRTTDDNPSARKYEYMA 750          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL1_PONAB (Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.280e-27
Identity = 75/231 (32.47%), Postives = 130/231 (56.28%), Query Frame = -2
Query:  132 SVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSK----DIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 812
            S T  LP+E+    ++F ++Y   H+GR+L+W   +   ++     K  ++ L  ST+QM +L+ +N  D  + +++  +T+I    L + LQ L  ++ K ++ ++  +     ++  D    +   + +K  +V I  V  + E + E++ T + +EEDRK  I+AAIVRIMK R+VL H  ++ EV  QL SRF      IKK I+ LIE+++LER + ++  Y YLA
Sbjct:  550 SCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKN-RYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL--LKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN-VPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL1_MOUSE (Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.280e-27
Identity = 75/231 (32.47%), Postives = 130/231 (56.28%), Query Frame = -2
Query:  132 SVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSK----DIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 812
            S T  LP+E+    ++F ++Y   H+GR+L+W   +   ++     K  ++ L  ST+QM +L+ +N  D  + +++  +T+I    L + LQ L  ++ K ++ ++  +     ++  D    +   + +K  +V I  V  + E + E++ T + +EEDRK  I+AAIVRIMK R+VL H  ++ EV  QL SRF      IKK I+ LIE+++LER + ++  Y YLA
Sbjct:  550 SCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKN-RYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL--LKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN-VPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL1_HUMAN (Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.280e-27
Identity = 75/231 (32.47%), Postives = 130/231 (56.28%), Query Frame = -2
Query:  132 SVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSK----DIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 812
            S T  LP+E+    ++F ++Y   H+GR+L+W   +   ++     K  ++ L  ST+QM +L+ +N  D  + +++  +T+I    L + LQ L  ++ K ++ ++  +     ++  D    +   + +K  +V I  V  + E + E++ T + +EEDRK  I+AAIVRIMK R+VL H  ++ EV  QL SRF      IKK I+ LIE+++LER + ++  Y YLA
Sbjct:  550 SCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKN-RYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL--LKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN-VPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL6_CAEEL (Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.865e-27
Identity = 74/223 (33.18%), Postives = 121/223 (54.26%), Query Frame = -2
Query:  132 LPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFF-VNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 797
            LP E+S + ++F ++Y  +H GRRL+W  +    ++ +   + +K+   V+  Q+C L LFN  D  +  +I +A E+ A      + SL  V    ++  +   KD    DA   +N K+ +K  +V + T + +  ++ E    +  VE DRK +I+A IVRIMK+R+ L H  +I E+  QL+SRF  N   IK  IE LIE+ ++ R   +  +Y YLA
Sbjct:  508 LPRELSTILKEFDTFYNASHNGRRLNWAYSQCRGEVNSKAFE-KKYVFIVTASQLCTLYLFNEQDSFTIEQISKAIEMTAKSTSAIVGSLNPVIDPVLVVDKGNEKDGYPPDAVVSLNTKYANKKVRVDLTTAIKKATADRETDAVQNTVESDRKYEIKACIVRIMKTRKSLTHTLLINEIISQLKSRFTPNVQMIKICIEILIEQLYIRRSENEHNVYEYLA 729          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL2_DICDI (Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.414e-26
Identity = 74/255 (29.02%), Postives = 134/255 (52.55%), Query Frame = -2
Query:  132 LPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDD---------------------------------AFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 797
            +P E++     F+ YY   H GR+L+W  ++  A+ K+ F K + ++  V+ +Q+ +L++FN  + +S  EI + T +  ++L R LQSL  +  K ++ K+     I  ++                                  + VN  +++K  KVK+ + + QKE+  + +ET + ++EDRK  ++A+IVRIMK+R+ ++H ++I EV +  + RF  N   IKK IE LIE++++ R   +   Y Y A
Sbjct:  521 VPQELTLCISAFQQYYSTQHQGRKLNWLHHLCKAEAKSFFAK-KSYDFQVTNFQLGILLIFNTQESVSLEEITKFTNLNENELSRTLQSL--IEAKILISKKKDQNSINNNNNNNNNNNNNGEGNNSLVDSANNMQPSSSSSSTQEYTVNSAYSNKRSKVKVSSSL-QKETPLQNEETYKGIDEDRKLYLQASIVRIMKARKTMNHVSLIQEVIEHSRLRFQPNIPMIKKCIEQLIEKEYITRAEGESDRYLYAA 771          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL1_DROME (Cullin homolog 1 OS=Drosophila melanogaster GN=lin19 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.730e-24
Identity = 71/224 (31.70%), Postives = 117/224 (52.23%), Query Frame = -2
Query:  132 LPAEMSALCEKFRSYYLGTHTGRRLSWQTNM--GSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 797
            LP+E+     +F  +Y   H+GR+L+W   M  G   +         + L  ST+QM VL+ FN+    + ++++  T+    +L + LQ L   +   VL        +  +    +   + +K  ++ I   + + E + E++   + +EEDRK  I+AAIVRIMK R+ L+H N+I+EV  QL +RF      IKK I+ LIE+++LER    +  Y YLA
Sbjct:  555 LPSELERSVRQFNEFYAARHSGRKLNWLYQMCKGELIMNVNRNNSSTYTLQASTFQMSVLLQFNDQLSFTVQQLQDNTQTQQENLIQVLQILLKAK---VLTSSDNENSLTPESTVELFLDYKNKKRRININQPL-KTELKVEQETVHKHIEEDRKLLIQAAIVRIMKMRKRLNHTNLISEVLNQLSTRFKPKVPVIKKCIDILIEKEYLERMEGHKDTYSYLA 774          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL1_CAEEL (Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.951e-24
Identity = 71/234 (30.34%), Postives = 118/234 (50.43%), Query Frame = -2
Query:  132 PSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLA---CVRGKNVLRKE---PMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 815
            P+    LP ++S   E F  +Y     GRRL+W  +    +I +T    +K+    +T QMC ++LFN  D  +  +I  AT++        + SL     ++    L+KE   PM+  +       +N  + +K  +V +     ++++  + +  ++ VEEDRK  I A IVRIMK+R+ + H  ++ EV  QL  RF      IK+ I SLIE++++ R    + LY YLA
Sbjct:  554 PTTPITLPQQLSKTIEIFGQFYNEKFNGRRLTWVYSQSRGEITST-AFPKKYVFTATTAQMCTMLLFNEQDSYTVEQIAAATKMDEKSAPAIVGSLIKNLVLKADTELQKEDEVPMTATVS------LNKAYMNKKVRVDLSKFTMKQDAVRDTENVQKNVEEDRKSVISACIVRIMKTRKRVQHQQLMTEVITQLSGRFKPKVEMIKRCIGSLIEKEYMLRTEGQKDLYEYLA 780          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL2_CAEEL (Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.499e-23
Identity = 67/225 (29.78%), Postives = 121/225 (53.78%), Query Frame = -2
Query:  132 NLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQ--RVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 800
            +LP  +  + ++F  +Y G H GR+L+W  NM   D++ T+   +++   +  YQM  L+ F   D +  ++I +   +    L + ++++  V    +L  +   +++  D    +N   TSK  K ++      K  E E++      +V +DRK  +E AIVRIMK+R+VL HN ++ E+  Q + RF  +   IKK IE LIE+ +++R + + + Y+YLA
Sbjct:  559 HLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTY-LDKQYVAQMYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTILDV---TLLTCD--DQNLTADSLVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTFQVSQDRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRTDQNDE-YQYLA 776          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL3_YEAST (Cullin-3 OS=Saccharomyces cerevisiae GN=CUL3 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.038e-22
Identity = 65/227 (28.63%), Postives = 113/227 (49.78%), Query Frame = -2
Query:  132 NLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVV----AQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 800
            +LP  MS +   F  YY   +  R L W  ++   +I   F  G  +E++ S Y   + +LF + + L+  EI + T IP  D+K  + S++ +    +L+K   S ++     F VN  F+S   KVK+  +     +QK        +    + +   ++ A IVRIMK+   L H  ++   TK+ QSR    P+ +K+ I+ LIE+++++R+  D   Y YL+
Sbjct:  523 SLPPRMSQILAGFEGYYSLKYKERVLKWAHHLSVIEIGCQFNSGY-YEISFSVYAGVIFLLFEDYEELTLGEIYELTHIPIDDVKSLVMSMSTIPRCKILKKSSSSGNM----KFSVNYFFSSPNRKVKVPVIACPLPSQKSDNLATASSVDTYDNEIVMELSAIIVRIMKTEGKLSHQQLLERTTKRTQSRLSLTPSILKRSIQLLIEKEYIQRNADDPSYYHYLS 744          
The following BLAST results are available for this feature:
BLAST of CN186277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CUL5_DICDI8.866e-2933.04Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 ... [more]
CUL1_PONAB1.280e-2732.47Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1[more]
CUL1_MOUSE1.280e-2732.47Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1[more]
CUL1_HUMAN1.280e-2732.47Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2[more]
CUL6_CAEEL4.865e-2733.18Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 S... [more]
CUL2_DICDI2.414e-2629.02Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 ... [more]
CUL1_DROME1.730e-2431.70Cullin homolog 1 OS=Drosophila melanogaster GN=lin... [more]
CUL1_CAEEL2.951e-2430.34Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 S... [more]
CUL2_CAEEL2.499e-2329.78Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 S... [more]
CUL3_YEAST8.038e-2228.63Cullin-3 OS=Saccharomyces cerevisiae GN=CUL3 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186277 ID=CN186277; Name=CN186277; organism=Citrus sinensis; type=EST; length=816bp
TTTTTTTTCTTGAACCAACTGAGATTGCAGAATTTGTAAAACAATTTTCG
ACTTACCAACTAACGTACAAATTGAATTGTTTGTGCTAAACTTTCCTCAA
GAAACAAGTAATCTTCTCATGCCAATCTTTAGGCAAGATACCGATACAAT
TTTCTGTCTACATTATCCCTCTCCAAGAAATCCCTTTCAATGAGGGACTC
AATCCGTTTTTTAATCTCCGTGGGGTTTGCCAGAAACCGTGACTGCAACT
GCTTTGTGACCTCAGCAATTATGTTGTTATGATCGAGTACTCTCCTTGAT
TTCATGATTCTAACGATGGCAGCTTCAATCTGAGGCTTCCTGTCCTCCTC
CACTCTTTGCCGAGTTTCCTGTTTCTCTGGTTCTGACTCCTTTTGTGCAA
CCACAGTTCCTATCTTTACCTTATAGAATTTGCTCGTGAACTTGTCATTG
ACAAAGAATGCATCATCTTCACCAATGTCTTTACTCATGGGTTCTTTCCG
AAGAACATTCTTCCCCCTCACACAAGCCAGAGATTGCAGGCACCTTTTCA
AGTCTGAAGCAGGAATCTCTGTTGCCTGCTCTATTTCCCGGTAGCTAAGC
CGATCAGCGTTGTTAAACAGCATGAGAACACACATTTGGTATGTGGAGAC
ATTCAGCTCATGCTTCTGACCTTTACCAAAGGTTGCCTTTATATCTGCTG
AGCCCATGTTGGTTTGCCAGGACAATCTCCGACCAGTATGAGTTCCAAGG
TAGTATGATCTAAATTTCTCACACAGAGCTGACATTTCGGCTGGCAGGTT
GCAAGTAACACTAGGC
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