CN186277

Overview
NameCN186277
Unique NameCN186277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5017 contig Csv1_Contig5017:34..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL5_PONAB (Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 4.410e-20
Identity = 75/241 (31.12%), Postives = 125/241 (51.87%), Query Frame = -2
Query:  132 VTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADR--LSYREIEQATEIPASDLKRCLQSLACVRG--KNVLRKEPM---SKDIGEDDAFFVNDKFTS-KFYKVK-------IGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 809
            V  +LP E+  L  +   +Y   H+GR+L W   M +  I      GQ ++L V+T+Q+ VL  +N   R  +S+  ++ ATE+P ++L+R L SL       + VL  EP     KD  E   F VN +F+  K  KV+       IG +  Q  +E  ++E  + + + R  + + AI++IMK R+ + +  +  E+ + L++ FL     IK++IE LIE  ++ RD  D   + Y+A
Sbjct:  543 VFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQ-YDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 780          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL5_HUMAN (Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4)

HSP 1 Score: 98.5969 bits (244), Expect = 4.410e-20
Identity = 75/241 (31.12%), Postives = 125/241 (51.87%), Query Frame = -2
Query:  132 VTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADR--LSYREIEQATEIPASDLKRCLQSLACVRG--KNVLRKEPM---SKDIGEDDAFFVNDKFTS-KFYKVK-------IGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 809
            V  +LP E+  L  +   +Y   H+GR+L W   M +  I      GQ ++L V+T+Q+ VL  +N   R  +S+  ++ ATE+P ++L+R L SL       + VL  EP     KD  E   F VN +F+  K  KV+       IG +  Q  +E  ++E  + + + R  + + AI++IMK R+ + +  +  E+ + L++ FL     IK++IE LIE  ++ RD  D   + Y+A
Sbjct:  543 VFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQ-YDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 780          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL5_RAT (Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 9.825e-20
Identity = 74/241 (30.71%), Postives = 124/241 (51.45%), Query Frame = -2
Query:  132 VTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADR--LSYREIEQATEIPASDLKRCLQSLACVRG--KNVLRKEPM---SKDIGEDDAFFVNDKFTS-KFYKVK-------IGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 809
            V  +LP E+  L  +   +Y   H+GR+L W   M +  I      GQ ++L V+T+Q+ VL  +N   R  +S+  ++ ATE+P ++L+R L SL       + VL  +P     KD  E   F VN  F+  K  KV+       IG +  Q  +E  ++E  + + + R  + + AI++IMK R+ + +  +  E+ + L++ FL     IK++IE LIE  ++ RD  D   + Y+A
Sbjct:  543 VFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQ-YDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSVNQDFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDEADINTFIYMA 780          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL5_MOUSE (Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.859e-19
Identity = 73/241 (30.29%), Postives = 124/241 (51.45%), Query Frame = -2
Query:  132 VTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADR--LSYREIEQATEIPASDLKRCLQSLACVRG--KNVLRKEPM---SKDIGEDDAFFVNDKFTS-KFYKVK-------IGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 809
            V  +LP E+  L  +   +Y   H+GR+L W   M +  I      GQ ++L V+T+Q+ VL  +N   R  +S+  ++ ATE+P ++L+R L SL       + VL  +P     KD  E   F VN  F+  K  KV+       IG +  Q  +E  ++E  + + + R  + + AI++IMK R+ + +  +  E+ + L++ FL     IK+++E LIE  ++ RD  D   + Y+A
Sbjct:  543 VFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQ-YDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSVNQDFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQMEWLIEHRYIRRDEADINTFIYMA 780          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL5_RABIT (Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.086e-18
Identity = 73/241 (30.29%), Postives = 122/241 (50.62%), Query Frame = -2
Query:  132 VTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADR--LSYREIEQATEIPASDLKRCLQSLACVRG--KNVLRKEPM---SKDIGEDDAFFVNDKFTS-KFYKVK-------IGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 809
            V  +LP E+  L  +   +Y   H+GR+L W   M +  I      GQ ++L V+T+Q+ VL  +N   R  +S+  ++ ATE+P ++L+R L SL       + VL  EP     KD  E   F VN +F+  K  KV+       IG +  Q  +E  ++E  + + + R  +     ++IMK R+ + +  +  E+ + L++ FL     IK++IE LIE  ++ RD  D   + Y+A
Sbjct:  543 VFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQ-YDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRL--QLTTERMREEENEGIVQLRILRTRKLYIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 780          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL5_CAEEL (Cullin-5 OS=Caenorhabditis elegans GN=cul-5 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 64/240 (26.67%), Postives = 118/240 (49.17%), Query Frame = -2
Query:  132 NLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNA--DRLSYREIEQATEIPASDLKRCLQSLAC---VRGKNVLRKEP----MSKDIGEDDAFFVNDKF-------TSKFYKVK-IGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 800
            +LP E+     +  ++Y   H GR+L W  +  S  +      G + +L  +T+QM VL  FN+   D++S   +  ATE+P ++L R L SL     +R + +L   P     ++D  +   F +N  F       + +  KV  IG +    E+  EK+   + +   R+ +++  IV+I+K+R+      +  E+ + L+  F+ N   IK++I+ LIE  ++ER   D   + Y++
Sbjct:  528 SLPRELEDFVPEMEAFYKKQHNGRKLCWMHHWSSGTMVFGTANGGRFDLECTTFQMAVLFCFNDRAHDKISLETLRLATELPDAELNRTLLSLVAYPKMRYQILLCDVPSTTVTARDFTDSTKFLINHDFNVVKNGKSQQRGKVNLIGRLQLSLEANAEKE--HESIVALRELRVQEGIVKILKTRKTYTLAQLTMELVEILKPLFIPNRKIIKEQIDWLIENKYMERRADDINTFVYIS 765          
The following BLAST results are available for this feature:
BLAST of CN186277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CUL5_PONAB4.410e-2031.12Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3[more]
CUL5_HUMAN4.410e-2031.12Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4[more]
CUL5_RAT9.825e-2030.71Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3[more]
CUL5_MOUSE2.859e-1930.29Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3[more]
CUL5_RABIT1.086e-1830.29Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=... [more]
CUL5_CAEEL2.265e-1626.67Cullin-5 OS=Caenorhabditis elegans GN=cul-5 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186277 ID=CN186277; Name=CN186277; organism=Citrus sinensis; type=EST; length=816bp
TTTTTTTTCTTGAACCAACTGAGATTGCAGAATTTGTAAAACAATTTTCG
ACTTACCAACTAACGTACAAATTGAATTGTTTGTGCTAAACTTTCCTCAA
GAAACAAGTAATCTTCTCATGCCAATCTTTAGGCAAGATACCGATACAAT
TTTCTGTCTACATTATCCCTCTCCAAGAAATCCCTTTCAATGAGGGACTC
AATCCGTTTTTTAATCTCCGTGGGGTTTGCCAGAAACCGTGACTGCAACT
GCTTTGTGACCTCAGCAATTATGTTGTTATGATCGAGTACTCTCCTTGAT
TTCATGATTCTAACGATGGCAGCTTCAATCTGAGGCTTCCTGTCCTCCTC
CACTCTTTGCCGAGTTTCCTGTTTCTCTGGTTCTGACTCCTTTTGTGCAA
CCACAGTTCCTATCTTTACCTTATAGAATTTGCTCGTGAACTTGTCATTG
ACAAAGAATGCATCATCTTCACCAATGTCTTTACTCATGGGTTCTTTCCG
AAGAACATTCTTCCCCCTCACACAAGCCAGAGATTGCAGGCACCTTTTCA
AGTCTGAAGCAGGAATCTCTGTTGCCTGCTCTATTTCCCGGTAGCTAAGC
CGATCAGCGTTGTTAAACAGCATGAGAACACACATTTGGTATGTGGAGAC
ATTCAGCTCATGCTTCTGACCTTTACCAAAGGTTGCCTTTATATCTGCTG
AGCCCATGTTGGTTTGCCAGGACAATCTCCGACCAGTATGAGTTCCAAGG
TAGTATGATCTAAATTTCTCACACAGAGCTGACATTTCGGCTGGCAGGTT
GCAAGTAACACTAGGC
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