CN186273

Overview
NameCN186273
Unique NameCN186273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.071e-27
Identity = 71/185 (38.38%), Postives = 99/185 (53.51%), Query Frame = 2
Query:  200 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPLSY 733
            K  Y+ +L   L +Y+ +L    DNV S Q+ ++ R LR  +  +MGK T+  + +   A+    +              LL GN GLIFT   +               ARVG ++P DV+V  G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I P  Y
Sbjct:    8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVGRALRAKAEFMMGKKTLQGKIVEKRAQAKDASPEAKHFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDAHRVKRAARVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYY 192          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25
Identity = 71/188 (37.77%), Postives = 107/188 (56.91%), Query Frame = 2
Query:  170 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPLSY 733
            M  K +K  K++ Y+ +  +L E Y++  +   +NV S QL++I+R   G++ +LMGKN+ ++R I       G      +  L++G+V  +F KG+              A A+VG VA  DV V    TG+ P +TS+FQ L I TKI KG VEII+P +++ +GDKVG S+A LL  L I+P  Y
Sbjct:   25 MTRKDAKERKELTYE-RARKLFETYSRFALVKIENVVSTQLKDIKRQWGGNAELLMGKNSAIRRAIA----DLGKPELSGVYDLVKGDVCFVFFKGNARDIKKAIDENVREACAKVGNVAQRDVWVESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCY 207          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_HALSA (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 53/171 (30.99%), Postives = 88/171 (51.46%), Query Frame = 2
Query:  215 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRP 724
            A+L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP       Q +    +I +G+++++    +  +G+ V    + +L++LGI P
Sbjct:   21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEP 186          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_HALS3 (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 53/171 (30.99%), Postives = 88/171 (51.46%), Query Frame = 2
Query:  215 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRP 724
            A+L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP       Q +    +I +G+++++    +  +G+ V    + +L++LGI P
Sbjct:   21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEP 186          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.111e-16
Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = 2
Query:  221 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            L +LL+    I +     V S QLQ IR  +R    + M +NT+MKR I   AE+TGN +F  LI  ++    LI T+ +              AP + G  AP D+ +  G+TG+ P    S  + + +P  I KG + I     + ++GD V +  A +L+KL I+P+
Sbjct:   21 LKELLKSGNVIALIDMMEVPSVQLQEIRDTIRDSMTLKMSRNTLMKRAIEEVAEETGNPSFTKLIDCMEKGAALIATEMNPFKLYKTLNESKSPAPIKAGATAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPM 190          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = 2
Query:  182 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            A  AE K     +L +LL++Y  I +    +V +  L  +R  LR  +V+ + +NT+++  ++  A++  ++    LI  +QG  G++ TK +              APA+ G  AP DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L +LGI PL
Sbjct:    2 AHVAEWKKKEVEELTKLLQDYPVIALVDVADVPAYPLSKMRESLRDKAVLRVSRNTLIELALKKAAQELNDSNLEKLIEHIQGGTGILVTKINPFKLYKFLEESKKPAPAKAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANILNQLGIEPL 184          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.203e-16
Identity = 54/183 (29.51%), Postives = 88/183 (48.09%), Query Frame = 2
Query:  182 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            A  AE K     +L  +++ Y  I +    NV +  L  +R  LRG +++ + +NT+++  I+  A++ G      LI  +QG  G++ T+ +              APA+ G+  P DVV+P G T + P       Q L IP +I KG V I     +++ G+ +    A +L  LGI PL
Sbjct:    2 AHVAEWKKKEVEELTNIIKSYPVIALVDVANVPAYPLSKMREKLRGKALLRVSRNTLIELAIKRAAQELGKPELEKLIDHIQGGAGILATEMNPFKLYKLLEESKTPAPAKPGVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPL 184          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_NATPD (Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.203e-16
Identity = 50/170 (29.41%), Postives = 86/170 (50.59%), Query Frame = 2
Query:  218 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRP 724
            +L   LE Y  + V     + S QLQ++RR L G + + + +NT+M+R +    +  G      L+  ++G VGLI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I  G+++++    ++  G++V S  + +L++LGI P
Sbjct:   21 ELVAFLERYESVGVVDITGIPSRQLQDMRRDLHGTAALRVSRNTLMERALNEGGDGLG-----ELVEHVEGQVGLIGTNDNPFGLYQQLEESKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGDLQQVGANARIEGGSIKVVEDSTVLSAGEEVSSDLSNVLSELGIEP 185          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_METM5 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.408e-16
Identity = 51/171 (29.82%), Postives = 87/171 (50.88%), Query Frame = 2
Query:  221 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPLS 730
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G VAP D+ +  G+TG+ P    S  + + +P  I+KG + I     ++++G+ V    + +L+ LGI+P++
Sbjct:   21 LKELLKSSSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAVAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIDKGKIGIKEDTVVVKEGEVVSQKLSVVLSALGIKPVT 191          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_METM6 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.229e-15
Identity = 55/171 (32.16%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  221 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPLS 730
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L   L     +I T+ +              AP + G  AP D+ V  G+TG+ P    S  + + IP  I+KG + I     +I++G+ V    A +L+ LGI+P++
Sbjct:   21 LKELLKSTSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLADYLDKGAAIIATEMNPFKLFKTLDESKSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVIKEGEVVSQKLAVVLSALGIKPVT 191          
The following BLAST results are available for this feature:
BLAST of CN186273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RLA0_LEIIN1.071e-2738.3860S acidic ribosomal protein P0 OS=Leishmania infa... [more]
RLA0_ENCCU1.310e-2537.7760S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_HALSA2.924e-1730.99Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_HALS32.924e-1730.99Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_METVO1.111e-1632.35Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_THESM3.233e-1631.15Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_THEON7.203e-1629.51Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_NATPD7.203e-1629.41Acidic ribosomal protein P0 homolog OS=Natronomona... [more]
RLA0_METM59.408e-1629.82Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM61.229e-1532.16Acidic ribosomal protein P0 homolog OS=Methanococc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186273 ID=CN186273; Name=CN186273; organism=Citrus sinensis; type=EST; length=735bp
CTGTTTTTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTTGAGGT
TAAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTGCTTCG
TCTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAACAAAA
GTAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGA
AGATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAA
ATATTGGTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAGAACAT
TCGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTA
TGATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCC
TTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCAC
AAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTG
GAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCT
CCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAGGTGCT
TAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCACACCTG
TGGAGCTTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAGCCCTG
CTTGCAAAGCTTGGGATTAGACCCCTCTCTTATGG
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