CN186273

Overview
NameCN186273
Unique NameCN186273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_METM7 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 54/171 (31.58%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  221 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPLS 730
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L   L     +I T+ +              AP + G  AP D+ V  G+TG+ P    S  + + IP  I+KG + I     ++++G+ V    A +L+ LGI+P++
Sbjct:   21 LKELLKSTSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLADYLDKGAAIIATEMNPFKLFKTLDESKSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVVKEGEVVSQKLAVVLSALGIKPVT 191          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_METVS (Acidic ribosomal protein P0 homolog OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rplP0 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 51/171 (29.82%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  221 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPLS 730
            L +LL+    I +     V + QLQ IR  +R    + M +NT++KR +   AE+TGN  F  L+  L     ++ T+ +              AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG + I     + ++GD +    A +L+ LGI+P++
Sbjct:   21 LKELLKSANVIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLIKRAVEEVAEETGNPEFAKLVDYLDKGAAIVVTEMNPFKLFKTLEESKSPAPIKGGAIAPCDIEVKSGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVAKEGDVISPKLAVVLSALGIKPVT 191          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.669e-15
Identity = 54/183 (29.51%), Postives = 86/183 (46.99%), Query Frame = 2
Query:  182 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            A  AE K     +L  +++ Y  I +     V +  L  +R  LRG +++ + +NT+++  I+  A++ G      LI  +QG   ++ T+ +              APA+ G V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI PL
Sbjct:    2 AHVAEWKKKEVEELANIIKSYPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELGQPELEKLIDHIQGGAAILATEMNPFKLYKLLEESKTPAPAKAGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPL 184          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_METMP (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.669e-15
Identity = 52/171 (30.41%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  221 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPLS 730
            L +LL+    I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG + I     ++++G+ V    A +L+ L I+P++
Sbjct:   21 LKELLKSSNIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAIAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKIVVKEGEVVSQKLAVVLSALDIKPVT 191          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_METKA (Acidic ribosomal protein P0 homolog OS=Methanopyrus kandleri GN=rplP0 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 57/182 (31.32%), Postives = 90/182 (49.45%), Query Frame = 2
Query:  191 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLN-LIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            AE K     +L +L++EY  + +   + + + QLQ IR  LR  D+++ M +NT+M+  +    EK      L  L+  ++G V  IFT  D              APA+ G +AP D+VVP G T  +P    S  Q   +P +I  G V I     L+++G+++    A +L KL I P+
Sbjct:   18 AEWKRREVKELKELMDEYENVGLVDLEGIPAPQLQEIRAKLRERDTIIRMSRNTLMRIALE---EKLDERPELEPLLDYIEGPVAFIFTNLDPFKLYKLLEESKASAPAKPGDIAPEDIVVPEGPTPFEPGPIVSELQQAGLPAQIQDGKVVITKDTVLVKEGEEIDEKTAEILKKLEIEPM 196          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_HALVO (Acidic ribosomal protein P0 homolog OS=Halobacterium volcanii GN=rplP0 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 2
Query:  218 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRP 724
            +L   +E Y  + V     + S QLQ++RR L G + V M +NT++ R +        N  F  L   + G V LI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I  G++ +     ++ +G++V    A +LA+LGI P
Sbjct:   22 ELVDFIESYESVGVVGVAGIPSRQLQSMRRELHGSAAVRMSRNTLVNRAL-----DEVNDGFEELKEYIAGQVALIGTNDNPFALFKELEASKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGELQQVGASARIMDGSIMVTEDSNVLSEGEEVSEELANVLAELGIEP 186          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_METTL (Acidic ribosomal protein P0 homolog OS=Methanococcus thermolithotrophicus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14
Identity = 54/178 (30.34%), Postives = 85/178 (47.75%), Query Frame = 2
Query:  200 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPLS 730
            KI    KL +LL+    + +     V + QLQ IR  +RG   + M +NT+++R I+  AE+TGN  F  L   +     +I T  +              AP + G VAP D+ V  G+TG+ P       + + IP  I KG + I     + + G+ V    A +L+ LGI+P++
Sbjct:   14 KIEEVNKLKELLKNGQIVALVDMMEVPARQLQEIRDKIRGTMTLKMSRNTLIERAIKEVAEETGNPEFAKLADYIDKGAAIITTDMNPFKLYKTLEESKSPAPIKGGAVAPCDIEVKAGSTGMPPGPFLGELKSVGIPAAIEKGKIGIKEDKVVAKAGEVVSHKLAVVLSALGIKPVT 191          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_METTH (Acidic ribosomal protein P0 homolog OS=Methanobacterium thermoautotrophicum GN=rplP0 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14
Identity = 52/183 (28.42%), Postives = 89/183 (48.63%), Query Frame = 2
Query:  182 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            A  AE K     +L  L++ Y  + +A   ++ + QLQ +R+ LR  +++ M K T++   +     +  N   L+    ++G   LIFT  +              APA+ G +AP D+VVP G+TG  P       Q + IP KI KG + +     +++ G+++    A +L +L I+PL
Sbjct:    2 AHVAEWKKKEVQELHDLIKGYEVVGIANLADIPARQLQKMRQTLRDSALIRMSKKTLISLALEKAGRELENVDSLS--DYMEGQPALIFTDMNPFKLFKILEDSKTPAPAKPGAIAPDDIVVPKGDTGFAPGPILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQPL 182          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_META3 (Acidic ribosomal protein P0 homolog OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 51/176 (28.98%), Postives = 84/176 (47.73%), Query Frame = 2
Query:  200 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRP 724
            KI     L +LL+E   I +     V + QLQ IR  +R    + M +NT++KR I   AE++ +  F  L   L+    ++ T  +              AP + G +AP D+VV  G+TG+ P       +   +P  I+KG + I     ++++G+ V    A +L+ LGI+P
Sbjct:   13 KIEEVNNLKKLLKEGQVIALVDMMEVPAVQLQEIRDNIRDLMTLRMSRNTLIKRAIEELAEESNDPKFAKLAECLERGAAIVITDMNPFKLYKTLEDGKAPAPIKAGAIAPSDIVVEAGSTGMPPGPFLGELKGAGLPAVIDKGKIAIKDDTVIVKEGEVVSPKVAVVLSALGIKP 188          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_METS3 (Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.346e-13
Identity = 49/183 (26.78%), Postives = 90/183 (49.18%), Query Frame = 2
Query:  182 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            A  AE K     +L  L+++Y  I +    N+ + QLQ +R+ L   +V+ M K  ++   +        N   ++L   ++G V +I T+ +              APA+ G +A  D+V+P G+TG +P       Q + IP KI+KG + +     L+  G++V ++ A+ L+++ I P+
Sbjct:    2 AHVAEWKKEEVNELKSLIDKYDVIGIVDLLNIPAKQLQEMRKSLHNKAVIRMSKKNLIDLALEDCNASKNN--IVDLSEHMEGQVAVIATEMNPFKLYKILEDSKTSAPAKPGAIATDDIVIPEGDTGFEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPM 182          
The following BLAST results are available for this feature:
BLAST of CN186273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RLA0_METM71.605e-1531.58Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METVS2.096e-1529.82Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_PYRKO4.669e-1529.51Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METMP4.669e-1530.41Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METKA7.964e-1531.32Acidic ribosomal protein P0 homolog OS=Methanopyru... [more]
RLA0_HALVO7.964e-1530.00Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_METTL1.774e-1430.34Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METTH3.026e-1428.42Acidic ribosomal protein P0 homolog OS=Methanobact... [more]
RLA0_META31.150e-1328.98Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METS33.346e-1326.78Acidic ribosomal protein P0 homolog OS=Methanobrev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186273 ID=CN186273; Name=CN186273; organism=Citrus sinensis; type=EST; length=735bp
CTGTTTTTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTTGAGGT
TAAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTGCTTCG
TCTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAACAAAA
GTAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGA
AGATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAA
ATATTGGTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAGAACAT
TCGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTA
TGATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCC
TTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCAC
AAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTG
GAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCT
CCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAGGTGCT
TAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCACACCTG
TGGAGCTTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAGCCCTG
CTTGCAAAGCTTGGGATTAGACCCCTCTCTTATGG
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