CN186273

Overview
NameCN186273
Unique NameCN186273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:26..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_METST (Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 46/172 (26.74%), Postives = 85/172 (49.42%), Query Frame = 2
Query:  215 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            A+L  L   +  I +    ++ + QLQ +R+ L  ++++ M +    K  I++  E +       L   L+G   ++FTK +              APA+ G +AP D+VVP G+T   P       Q + IP KI+KG++ +    +++ +G+++  + A +L KL I P+
Sbjct:   13 AELEDLTNSHEIIGIVNLADIPAKQLQTMRKSLGDNAILKMSR----KNFIKIALENSDKEEVEGLADYLEGQPAMVFTKMNPFKLFKILEDSKTEAPAKAGSIAPADIVVPAGDTSFPPGPILGELQQVGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADILTKLEIHPM 180          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 53/188 (28.19%), Postives = 87/188 (46.28%), Query Frame = 2
Query:  167 EMVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            E  VKA  A  KI     L  L++    + +    +V + QLQ IR  +R    + M +NT++ R ++  AE+  N     L   ++    ++ T  +              AP R G +AP D+ V  G+TG+ P       + + IP  I KG + I     +++KG+ V    AA+L +LGI+P+
Sbjct:    2 ETKVKAHVAPWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPI 189          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_HALMA (50S ribosomal protein L10E OS=Haloarcula marismortui GN=rplP0 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 45/169 (26.63%), Postives = 85/169 (50.30%), Query Frame = 2
Query:  221 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRP 724
            + +++E Y  + V     + S QLQ++RR L G + + + +NT+++R +        +    +L   + G VGLI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I +G++++++   ++  G++V    + +L +LGI P
Sbjct:   23 IVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERAL-----DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEP 186          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_THEGJ (Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 2
Query:  182 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            A  AE K     +L ++++ +  I +     V +  L  +R  LRG +++ + +NT+++  I+  A++        L   ++G   ++ T+ +              APA+ G V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI PL
Sbjct:    2 AHVAEWKKKEVEELTKIIKSHPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELNKPDLEKLADYIEGGAAILATEMNPFKLYKLLEESKTPAPAKPGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNALGIEPL 184          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 53/184 (28.80%), Postives = 87/184 (47.28%), Query Frame = 2
Query:  182 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            A  AE K     +L +L++ Y  I +    ++ +  L  +RR +R +  +L + +NT+++  I+  A++ G      L+  +    G++ T  +              APA+ G V P DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI+PL
Sbjct:    2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPL 185          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_PYRFU (Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 50/184 (27.17%), Postives = 89/184 (48.37%), Query Frame = 2
Query:  182 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            A  AE K     +L  L++ Y  + +    ++ +  L  +RR +R ++ +L + +NT+++  I+  A++ G      LI  ++G  G++ T  +              APA+ G   P DVV+P G T L P       Q + IP +I +G V I     +++ G+++    A +L  LGI+PL
Sbjct:    2 AHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPL 185          
BLAST of CN186273 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 50/184 (27.17%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  182 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPL 727
            A  AE K     +L  L++ Y  I +    ++ +  L  +RR +R +  +L + +NT+++  I+  A++ G      L   +    G++ T  +              APA+ G V P DVV+P G T L P       Q + IP +I +G V I     +++ G+ +    A +L  LGI+PL
Sbjct:    2 AHVAEWKKKEVEELANLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAQELGKPELEKLAEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVIPAGPTPLAPGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPL 185          
The following BLAST results are available for this feature:
BLAST of CN186273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RLA0_METST4.370e-1326.74Acidic ribosomal protein P0 homolog OS=Methanospha... [more]
RLA0_METJA5.707e-1328.19Acidic ribosomal protein P0 homolog OS=Methanocald... [more]
RLA0_HALMA7.454e-1326.6350S ribosomal protein L10E OS=Haloarcula marismort... [more]
RLA0_THEGJ1.271e-1227.32Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_PYRHO1.661e-1228.80Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRFU1.661e-1227.17Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRAB2.398e-1127.17Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186273 ID=CN186273; Name=CN186273; organism=Citrus sinensis; type=EST; length=735bp
CTGTTTTTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTTGAGGT
TAAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTGCTTCG
TCTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAACAAAA
GTAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGA
AGATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAA
ATATTGGTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAGAACAT
TCGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTA
TGATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCC
TTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCAC
AAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTG
GAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCT
CCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAGGTGCT
TAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCACACCTG
TGGAGCTTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAGCCCTG
CTTGCAAAGCTTGGGATTAGACCCCTCTCTTATGG
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