CN186272

Overview
NameCN186272
Unique NameCN186272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.575e-48
Identity = 99/205 (48.29%), Postives = 133/205 (64.88%), Query Frame = -3
Query:  160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774
            R   +AP+DV VP GNTG++P +TSFFQ L IPTKI +GT+EI + V L+ K  KVG SEA LL  L I PF+YG+ V ++Y+ G+V+SPE+LD+SE+DL+    S+ S++TA++L  +YPT+ +  H  VNAYKN+VAV+LATEY+F   ++ K +LADPS F                             ESDEDMGF LFD
Sbjct:  110 RPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMGFGLFD 312          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.575e-48
Identity = 96/205 (46.83%), Postives = 137/205 (66.83%), Query Frame = -3
Query:  160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774
            + G +AP DV +PP NTG+ P +TSFFQ L IPTKI +GT+EI+  V LI++GDKVG+SE+ALL  LG+ PFSYGLVV+ VY++G++Y+PEVLD++ ++L ++F S V  V +++LA++YPTLA+  H   N  +N++ VA  T+ SF +A+ +K ++ADPSKF                             ESD+DMGF LFD
Sbjct:  112 KAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF----AAAAPAAAAAPAAAAPAAKKEEPKEESDDDMGFGLFD 312          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.687e-42
Identity = 77/164 (46.95%), Postives = 121/164 (73.78%), Query Frame = -3
Query:  283 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 774
            R G VAP+DV +P GNTG++P +TSFFQ L +PTKI +GT+EI T ++L+  G KVG SEA LL  L I PF+YG+ +  VY+ G+ +   VLD+SE+ L++ F+S+++ + A++LA+++PTL +  H  VN+YK V+AVA+ TE S+P+ +++K+ +A+P  +
Sbjct:  110 RAGAVAPVDVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSSVLDISEEQLLKAFSSAITTIAAVSLALNFPTLPSVIHSLVNSYKKVLAVAIETEISWPEIEELKDRIANPEAY 273          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.908e-42
Identity = 76/164 (46.34%), Postives = 121/164 (73.78%), Query Frame = -3
Query:  283 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 774
            R G +AP DV +P GNTG++P +TSFFQ L +PTKI +GT+EI T ++L+  G KVG SEA LL  L I PF+YG+ +  VY+ G+ +  +VLD+SE+ L++ F+++++ + +L+LA+++PTL +  H  VNAYK V+AVA+ TE S+P+ +++K+ +A+P  +
Sbjct:  110 RAGAIAPADVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSDVLDISEEQLLKAFSTAITTIASLSLALNFPTLPSVIHSVVNAYKKVLAVAIETEISWPEIEELKDRIANPEAY 273          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.155e-41
Identity = 84/205 (40.98%), Postives = 128/205 (62.44%), Query Frame = -3
Query:  160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774
            R G VAP D+ V   NTG++P +TSFFQ L +PTKI +GT+EI++ V+++  G+KVG SEA+LL  L I PF++GL V  VY+NG V+   +LD+++++LV  F S+VS + +++LAI YPTL +  H  +N YK+++AVA+A  Y +P+ + + + + +P K+                             ESD+DMGF LFD
Sbjct:  110 RAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYHYPEIEDLVDRIENPEKY--AAAAPAATSAASGDAAPAEEAAAEEEEESDDDMGFGLFD 312          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.426e-41
Identity = 87/203 (42.86%), Postives = 123/203 (60.59%), Query Frame = -3
Query:  160 GLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 768
            G+ AP DV +P G TG+DP  T FFQ L I TKI KG +EI   V+LIR+G++V +S A LL KL ++PF+YGL V+ VY+NGSVYS  VLD++++ ++E FA+  + V A++ A+  P+ AAAPH  + A++N  A+ L T + FPQ  ++KE + +P+ F                             E D DMGFSLFD
Sbjct:  113 GVTAPTDVFIPAGPTGMDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYGLKVEHVYDNGSVYSASVLDITDEQILEAFAAGAANVAAVSRAVGLPSAAAAPHSILEAFRNCAALCLDTPFCFPQMQRLKEMVENPAAF-AAAAAPAAAAPAAAPAAAAKAPEPEEEEEEDGDMGFSLFD 314          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.478e-38
Identity = 74/159 (46.54%), Postives = 111/159 (69.81%), Query Frame = -3
Query:  298 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 774
            + G+ AP DV++P G TG++P+QTSF Q L I TKIN+G ++I+  V +I+ G KVG+SEA LL KL I+PF+YGL  + +Y+ G+ YSP +   SE+DL+ KF   +  + A++L I YPT+A+ PH  +NA+KN++A++  T Y+F  A+K K   A
Sbjct:  111 KAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSI---SEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAA 266          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.292e-38
Identity = 84/205 (40.98%), Postives = 126/205 (61.46%), Query Frame = -3
Query:  160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774
            R+G++APIDV +PPG TG+DPS TSF + L I TKI KG +EI   V LI++G+KV +S A LL K  + P SYG+ V++VY++G +Y  +VLD++++D++EKF+  VS V AL+ A    T A+ PH+FV A+KN+VA+ + ++Y+FP    +K+++ +P  F                             E D  MGF +FD
Sbjct:  113 RLGVIAPIDVFIPPGPTGMDPSHTSFLESLGISTKIVKGQIEIQEHVHLIKQGEKVTASSATLLRKFNMNP-SYGVDVRTVYDDGVIYDAKVLDITDEDILEKFSKGVSNVAALSRATGVITEASYPHVFVEAFKNIVALIIDSDYTFPLMKILKKWVENPEAFAAVAAPASAAKADEPKKEEAKKVEEEEEEEEDGFMGFGMFD 316          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.208e-34
Identity = 75/153 (49.02%), Postives = 105/153 (68.63%), Query Frame = -3
Query:  319 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKF-ASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQAD 774
            RVG +AP DV+VP GNTG++P  TSFFQ LNI TKI KGTVEI++  +++  GD+V +S A LL KL I PF Y + VQSV++ G ++  E L ++ DD+VEK+    +S V AL+L    PT A  PHM ++A+K ++  ++ATEY F + D
Sbjct:  119 RVGAIAPCDVIVPAGNTGMEPKATSFFQALNIATKIAKGTVEIVSDKKVLSVGDRVDNSTATLLQKLDISPFYYQVEVQSVWDRGMLFLREDLSIT-DDVVEKYLLEGISNVAALSLGAGIPTAATLPHMIMDAFKTLLGASVATEYEFDEFD 270          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.683e-31
Identity = 69/150 (46.00%), Postives = 101/150 (67.33%), Query Frame = -3
Query:  325 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 774
            RVG ++P DV+V  G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +     +S V A+AL    PT +    M V+A+KN++AV++AT Y F +
Sbjct:  119 RVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 268          
The following BLAST results are available for this feature:
BLAST of CN186272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RLA0_SCHPO1.575e-4848.2960S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_CAEEL1.575e-4846.8360S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0_PODAN1.687e-4246.9560S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_NEUCR4.908e-4246.3460S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_YEAST4.155e-4140.9860S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_EIMTE5.426e-4142.8660S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_DICDI1.478e-3846.5460S acidic ribosomal protein P0 OS=Dictyostelium d... [more]
RLA0_PLAF83.292e-3840.9860S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_TRYCR2.208e-3449.0260S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_LEIIN8.683e-3146.0060S acidic ribosomal protein P0 OS=Leishmania infa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186272 ID=CN186272; Name=CN186272; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGGGACAGAATATATATTGTCCTAAATAAACGAT
TATATAAAATAAAAAGGAAACTGAGTCTACAAAAAGCATTAAGAAAATAA
AGCAAACATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACA
GTGCACTTAGTCGAACAAGCTGAAGCCCATATCTTCATCAGACTCCTCAG
CGGGGTCTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCA
CCACCGCCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGC
CAGGTACTCCTTCACTTTGTCGGCCTGAGGGAATGAATACTCAGTTGCAA
GAGCAACAGCAACCACATTCTTGTATGCATTGACGAACATGTGTGGAGCA
GCTGCCAGGGTCGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGA
TACACTTGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGA
CCTCTGGGCTGTAGACGGAACCGTTTTCATAGACAGACTGGACAACAAGA
CCATAAGAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGA
AGATCCCACCTTGTCACCCTTCCTAATAAGCTCCACAGGTGTGATAATTT
CAACAGTACCCTTGTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAG
GAGGTCTGGGAGGGGTCGAGACCTGTGTTGCCGGGAGGAACAACCACATC
AATTGGAGCAACCAAACCAACACGAG
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