CN186272
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 1.575e-48 Identity = 99/205 (48.29%), Postives = 133/205 (64.88%), Query Frame = -3 Query: 160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774 R +AP+DV VP GNTG++P +TSFFQ L IPTKI +GT+EI + V L+ K KVG SEA LL L I PF+YG+ V ++Y+ G+V+SPE+LD+SE+DL+ S+ S++TA++L +YPT+ + H VNAYKN+VAV+LATEY+F ++ K +LADPS F ESDEDMGF LFD Sbjct: 110 RPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMGFGLFD 312
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3) HSP 1 Score: 192.971 bits (489), Expect = 1.575e-48 Identity = 96/205 (46.83%), Postives = 137/205 (66.83%), Query Frame = -3 Query: 160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774 + G +AP DV +PP NTG+ P +TSFFQ L IPTKI +GT+EI+ V LI++GDKVG+SE+ALL LG+ PFSYGLVV+ VY++G++Y+PEVLD++ ++L ++F S V V +++LA++YPTLA+ H N +N++ VA T+ SF +A+ +K ++ADPSKF ESD+DMGF LFD Sbjct: 112 KAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF----AAAAPAAAAAPAAAAPAAKKEEPKEESDDDMGFGLFD 312
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.687e-42 Identity = 77/164 (46.95%), Postives = 121/164 (73.78%), Query Frame = -3 Query: 283 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 774 R G VAP+DV +P GNTG++P +TSFFQ L +PTKI +GT+EI T ++L+ G KVG SEA LL L I PF+YG+ + VY+ G+ + VLD+SE+ L++ F+S+++ + A++LA+++PTL + H VN+YK V+AVA+ TE S+P+ +++K+ +A+P + Sbjct: 110 RAGAVAPVDVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSSVLDISEEQLLKAFSSAITTIAAVSLALNFPTLPSVIHSLVNSYKKVLAVAIETEISWPEIEELKDRIANPEAY 273
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 4.908e-42 Identity = 76/164 (46.34%), Postives = 121/164 (73.78%), Query Frame = -3 Query: 283 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 774 R G +AP DV +P GNTG++P +TSFFQ L +PTKI +GT+EI T ++L+ G KVG SEA LL L I PF+YG+ + VY+ G+ + +VLD+SE+ L++ F+++++ + +L+LA+++PTL + H VNAYK V+AVA+ TE S+P+ +++K+ +A+P + Sbjct: 110 RAGAIAPADVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSDVLDISEEQLLKAFSTAITTIASLSLALNFPTLPSVIHSVVNAYKKVLAVAIETEISWPEIEELKDRIANPEAY 273
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 4.155e-41 Identity = 84/205 (40.98%), Postives = 128/205 (62.44%), Query Frame = -3 Query: 160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774 R G VAP D+ V NTG++P +TSFFQ L +PTKI +GT+EI++ V+++ G+KVG SEA+LL L I PF++GL V VY+NG V+ +LD+++++LV F S+VS + +++LAI YPTL + H +N YK+++AVA+A Y +P+ + + + + +P K+ ESD+DMGF LFD Sbjct: 110 RAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYHYPEIEDLVDRIENPEKY--AAAAPAATSAASGDAAPAEEAAAEEEEESDDDMGFGLFD 312
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 5.426e-41 Identity = 87/203 (42.86%), Postives = 123/203 (60.59%), Query Frame = -3 Query: 160 GLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 768 G+ AP DV +P G TG+DP T FFQ L I TKI KG +EI V+LIR+G++V +S A LL KL ++PF+YGL V+ VY+NGSVYS VLD++++ ++E FA+ + V A++ A+ P+ AAAPH + A++N A+ L T + FPQ ++KE + +P+ F E D DMGFSLFD Sbjct: 113 GVTAPTDVFIPAGPTGMDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYGLKVEHVYDNGSVYSASVLDITDEQILEAFAAGAANVAAVSRAVGLPSAAAAPHSILEAFRNCAALCLDTPFCFPQMQRLKEMVENPAAF-AAAAAPAAAAPAAAPAAAAKAPEPEEEEEEDGDMGFSLFD 314
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 1.478e-38 Identity = 74/159 (46.54%), Postives = 111/159 (69.81%), Query Frame = -3 Query: 298 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 774 + G+ AP DV++P G TG++P+QTSF Q L I TKIN+G ++I+ V +I+ G KVG+SEA LL KL I+PF+YGL + +Y+ G+ YSP + SE+DL+ KF + + A++L I YPT+A+ PH +NA+KN++A++ T Y+F A+K K A Sbjct: 111 KAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSI---SEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAA 266
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 3.292e-38 Identity = 84/205 (40.98%), Postives = 126/205 (61.46%), Query Frame = -3 Query: 160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774 R+G++APIDV +PPG TG+DPS TSF + L I TKI KG +EI V LI++G+KV +S A LL K + P SYG+ V++VY++G +Y +VLD++++D++EKF+ VS V AL+ A T A+ PH+FV A+KN+VA+ + ++Y+FP +K+++ +P F E D MGF +FD Sbjct: 113 RLGVIAPIDVFIPPGPTGMDPSHTSFLESLGISTKIVKGQIEIQEHVHLIKQGEKVTASSATLLRKFNMNP-SYGVDVRTVYDDGVIYDAKVLDITDEDILEKFSKGVSNVAALSRATGVITEASYPHVFVEAFKNIVALIIDSDYTFPLMKILKKWVENPEAFAAVAAPASAAKADEPKKEEAKKVEEEEEEEEDGFMGFGMFD 316
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2) HSP 1 Score: 145.976 bits (367), Expect = 2.208e-34 Identity = 75/153 (49.02%), Postives = 105/153 (68.63%), Query Frame = -3 Query: 319 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKF-ASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQAD 774 RVG +AP DV+VP GNTG++P TSFFQ LNI TKI KGTVEI++ +++ GD+V +S A LL KL I PF Y + VQSV++ G ++ E L ++ DD+VEK+ +S V AL+L PT A PHM ++A+K ++ ++ATEY F + D Sbjct: 119 RVGAIAPCDVIVPAGNTGMEPKATSFFQALNIATKIAKGTVEIVSDKKVLSVGDRVDNSTATLLQKLDISPFYYQVEVQSVWDRGMLFLREDLSIT-DDVVEKYLLEGISNVAALSLGAGIPTAATLPHMIMDAFKTLLGASVATEYEFDEFD 270
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 8.683e-31 Identity = 69/150 (46.00%), Postives = 101/150 (67.33%), Query Frame = -3 Query: 325 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 774 RVG ++P DV+V G+TG++P+QTSFFQ LNI TKI KG VEI+T +++ GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + + +S V A+AL PT + M V+A+KN++AV++AT Y F + Sbjct: 119 RVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 268 The following BLAST results are available for this feature:
BLAST of CN186272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186272 ID=CN186272; Name=CN186272; organism=Citrus sinensis; type=EST; length=776bpback to top |