CN186272

Overview
NameCN186272
Unique NameCN186272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:535..1309. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.526e-30
Identity = 71/150 (47.33%), Postives = 101/150 (67.33%), Query Frame = -3
Query:  325 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 774
            RVG + P DVVVP G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +     +S V A+AL    PT +    M V+A+KN++AV++AT Y F +
Sbjct:  119 RVGAI-PCDVVVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 267          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.824e-27
Identity = 60/154 (38.96%), Postives = 95/154 (61.69%), Query Frame = -3
Query:  313 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKV 774
            +VG VA  DV V    TG+ P +TS+FQ L I TKI KG VEII+P +++ +GDKVG S+A LL  L I+PF Y + +  +YE+G +Y   ++D+ E+D+     +++S V A +L     T A+ P+   NA+K+++ V+L  ++   +   V
Sbjct:  134 KVGNVAQRDVWVESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYEDGVIYDSSLIDIGEEDIFTSLRNAISTVAAASLGAGVITQASMPYNVRNAFKDILHVSLGADFMIKEQSMV 287          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.217e-16
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = -3
Query:  337 GLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 768
            G V P DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++    +      LA+ I+YPT      +   A+ N   VA+   Y
Sbjct:  115 GAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEAGY 259          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.217e-16
Identity = 52/160 (32.50%), Postives = 84/160 (52.50%), Query Frame = -3
Query:  298 RVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 774
            R G +AP D+ V  G+TG+ P       + + IP  I KG + I     +++KG+ V    AA+L +LGI+P   GL + +VYE+G +Y+P+VL + E+ L+    ++      LA   +YP     P +   A+ N  A AL+ E +F   +   + LA
Sbjct:  117 RGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADIQAAYQNAFNLAFNTAYPAKEVLPFLIQKAFIN--ARALSVETAFVTKETAGDILA 274          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.542e-16
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = -3
Query:  337 GLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 768
            G V P DVV+P G T L P       Q + IP +I +G V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++    +      LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:  115 GAVVPKDVVIPAGPTPLAPGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMVQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKAVAVEAGY 259          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.542e-16
Identity = 47/143 (32.87%), Postives = 76/143 (53.15%), Query Frame = -3
Query:  349 RVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVAL 774
            + G  AP D+ +  G+TG+ P    S  + + +P  I KG + I     + ++GD V +  A +L+KL I+P   GL V  VYE+G VY PE+L + ED+ + K  S+ +    L++    PT A    +   A+ N  AV++
Sbjct:  118 KAGATAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDGIVYDPEILKIDEDEFLAKLQSAYTGAFNLSVNAVIPTSATIETIVQKAFSNAKAVSI 260          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_PYRFU (Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.296e-15
Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = -3
Query:  337 GLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 768
            G   P DVV+P G T L P       Q + IP +I +G V I     +++ G+++    A +L  LGI+P   GL + +VYE+G +Y+P+VL + E + +     +      LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:  115 GAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVEAGY 259          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.998e-15
Identity = 48/147 (32.65%), Postives = 71/147 (48.30%), Query Frame = -3
Query:  337 RVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 774
            + G V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY+P+VL + E + +     +      L++ I+YPT      +   AY     VA+   Y
Sbjct:  112 KAGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPDVLAIDESEYINMLQKAYMHAFNLSVNIAYPTKQTIEAILQKAYLGAKNVAVEAGY 258          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.114e-15
Identity = 47/149 (31.54%), Postives = 72/149 (48.32%), Query Frame = -3
Query:  325 GLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 768
            G+  P DVV+P G T + P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY+PEVL + E++ +     +      L++  +YPT      +   AY     VA+   Y  P+
Sbjct:  114 GVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPEVLAIDEEEYINLLQQAYMHAFNLSVNTAYPTSQTIEAIIQKAYLGAKNVAVEAGYITPE 262          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.679e-15
Identity = 48/147 (32.65%), Postives = 72/147 (48.98%), Query Frame = -3
Query:  337 RVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 774
            + G  AP DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L +LGI P   GL + + YE+G VY+PEVL + E+  +     +      L++ ++YPT      +   A+     VA+   Y
Sbjct:  112 KAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANILNQLGIEPLEVGLKLLAAYEHGIVYTPEVLAIDEEQYISMLQQAYMHAFNLSVNVAYPTKQTIEAIIQKAFLGAKNVAVEAGY 258          
The following BLAST results are available for this feature:
BLAST of CN186272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RLA0_LEICH2.526e-3047.3360S acidic ribosomal protein P0 OS=Leishmania chag... [more]
RLA0_ENCCU5.824e-2738.9660S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_PYRHO1.217e-1635.86Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METJA1.217e-1632.50Acidic ribosomal protein P0 homolog OS=Methanocald... [more]
RLA0_PYRAB3.542e-1634.48Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METVO3.542e-1632.87Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_PYRFU2.296e-1532.41Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRKO2.998e-1532.65Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_THEON5.114e-1531.54Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_THESM6.679e-1532.65Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186272 ID=CN186272; Name=CN186272; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGGGACAGAATATATATTGTCCTAAATAAACGAT
TATATAAAATAAAAAGGAAACTGAGTCTACAAAAAGCATTAAGAAAATAA
AGCAAACATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACA
GTGCACTTAGTCGAACAAGCTGAAGCCCATATCTTCATCAGACTCCTCAG
CGGGGTCTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCA
CCACCGCCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGC
CAGGTACTCCTTCACTTTGTCGGCCTGAGGGAATGAATACTCAGTTGCAA
GAGCAACAGCAACCACATTCTTGTATGCATTGACGAACATGTGTGGAGCA
GCTGCCAGGGTCGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGA
TACACTTGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGA
CCTCTGGGCTGTAGACGGAACCGTTTTCATAGACAGACTGGACAACAAGA
CCATAAGAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGA
AGATCCCACCTTGTCACCCTTCCTAATAAGCTCCACAGGTGTGATAATTT
CAACAGTACCCTTGTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAG
GAGGTCTGGGAGGGGTCGAGACCTGTGTTGCCGGGAGGAACAACCACATC
AATTGGAGCAACCAAACCAACACGAG
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