CN186272
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.526e-30 Identity = 71/150 (47.33%), Postives = 101/150 (67.33%), Query Frame = -3 Query: 325 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 774 RVG + P DVVVP G+TG++P+QTSFFQ LNI TKI KG VEI+T +++ GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + + +S V A+AL PT + M V+A+KN++AV++AT Y F + Sbjct: 119 RVGAI-PCDVVVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 267
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.824e-27 Identity = 60/154 (38.96%), Postives = 95/154 (61.69%), Query Frame = -3 Query: 313 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKV 774 +VG VA DV V TG+ P +TS+FQ L I TKI KG VEII+P +++ +GDKVG S+A LL L I+PF Y + + +YE+G +Y ++D+ E+D+ +++S V A +L T A+ P+ NA+K+++ V+L ++ + V Sbjct: 134 KVGNVAQRDVWVESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYEDGVIYDSSLIDIGEEDIFTSLRNAISTVAAASLGAGVITQASMPYNVRNAFKDILHVSLGADFMIKEQSMV 287
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.217e-16 Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = -3 Query: 337 GLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 768 G V P DVVVP G T L P Q L IP +I KG V I +++ G+ + A +L LGI+P GL V +VYE+G VY+P+VL + E + ++ + LA+ I+YPT + A+ N VA+ Y Sbjct: 115 GAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEAGY 259
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.217e-16 Identity = 52/160 (32.50%), Postives = 84/160 (52.50%), Query Frame = -3 Query: 298 RVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 774 R G +AP D+ V G+TG+ P + + IP I KG + I +++KG+ V AA+L +LGI+P GL + +VYE+G +Y+P+VL + E+ L+ ++ LA +YP P + A+ N A AL+ E +F + + LA Sbjct: 117 RGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADIQAAYQNAFNLAFNTAYPAKEVLPFLIQKAFIN--ARALSVETAFVTKETAGDILA 274
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.542e-16 Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = -3 Query: 337 GLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 768 G V P DVV+P G T L P Q + IP +I +G V I +++ G+ + A +L LGI+P GL V +VYE+G VY+P+VL + E + ++ + LA+ I+YPT + A+ N AVA+ Y Sbjct: 115 GAVVPKDVVIPAGPTPLAPGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMVQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKAVAVEAGY 259
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.542e-16 Identity = 47/143 (32.87%), Postives = 76/143 (53.15%), Query Frame = -3 Query: 349 RVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVAL 774 + G AP D+ + G+TG+ P S + + +P I KG + I + ++GD V + A +L+KL I+P GL V VYE+G VY PE+L + ED+ + K S+ + L++ PT A + A+ N AV++ Sbjct: 118 KAGATAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDGIVYDPEILKIDEDEFLAKLQSAYTGAFNLSVNAVIPTSATIETIVQKAFSNAKAVSI 260
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_PYRFU (Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus GN=rplP0 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.296e-15 Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = -3 Query: 337 GLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 768 G P DVV+P G T L P Q + IP +I +G V I +++ G+++ A +L LGI+P GL + +VYE+G +Y+P+VL + E + + + LA+ I+YPT + A+ N AVA+ Y Sbjct: 115 GAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVEAGY 259
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.998e-15 Identity = 48/147 (32.65%), Postives = 71/147 (48.30%), Query Frame = -3 Query: 337 RVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 774 + G V P DVV+P G T L P Q L IP +I KG V I +++ G+ + A +L LGI P GL + + YE+G VY+P+VL + E + + + L++ I+YPT + AY VA+ Y Sbjct: 112 KAGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPDVLAIDESEYINMLQKAYMHAFNLSVNIAYPTKQTIEAILQKAYLGAKNVAVEAGY 258
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.114e-15 Identity = 47/149 (31.54%), Postives = 72/149 (48.32%), Query Frame = -3 Query: 325 GLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 768 G+ P DVV+P G T + P Q L IP +I KG V I +++ G+ + A +L LGI P GL + + YE+G VY+PEVL + E++ + + L++ +YPT + AY VA+ Y P+ Sbjct: 114 GVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPEVLAIDEEEYINLLQQAYMHAFNLSVNTAYPTSQTIEAIIQKAYLGAKNVAVEAGYITPE 262
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.679e-15 Identity = 48/147 (32.65%), Postives = 72/147 (48.98%), Query Frame = -3 Query: 337 RVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 774 + G AP DVVVP G T L P Q L IP +I KG V I +++ G+ + A +L +LGI P GL + + YE+G VY+PEVL + E+ + + L++ ++YPT + A+ VA+ Y Sbjct: 112 KAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANILNQLGIEPLEVGLKLLAAYEHGIVYTPEVLAIDEEQYISMLQQAYMHAFNLSVNVAYPTKQTIEAIIQKAFLGAKNVAVEAGY 258 The following BLAST results are available for this feature:
BLAST of CN186272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186272 ID=CN186272; Name=CN186272; organism=Citrus sinensis; type=EST; length=776bpback to top |