EY665739

Overview
NameEY665739
Unique NameEY665739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665739 vs. ExPASy Swiss-Prot
Match: SHOC2_NEMVE (Leucine-rich repeat protein soc-2 homolog OS=Nematostella vectensis GN=v1g189306 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11
Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 2
Query:   65 HLEQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLK 448
            +LE L LS N+   + P  IG L KL+ LD+  N+L   IP EI +L  L  L    N L GS+P  IG LS +  L++  N L  S+P  +GN+ +L   Y N+N    S+P  L    SL  M ++
Sbjct:  412 NLEVLILSNNLLKKL-PRGIGALRKLRVLDIEENKLES-IPTEIEYLRSLERLVLQSNCL-GSLPRSIGYLSSVTYLSVGENELV-SVPQEIGNMESLEQLYLNDNENLQSLPYELVLCGSLQIMSIE 535          
BLAST of EY665739 vs. ExPASy Swiss-Prot
Match: SUR8_DROAN (Leucine-rich repeat protein soc-2 homolog OS=Drosophila ananassae GN=Sur-8 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 49/138 (35.51%), Postives = 75/138 (54.35%), Query Frame = 2
Query:   65 HLEQLNLSFNIFFGIIPPQIGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLKPNQFSGSIPP 478
            +LE L LS N+   I P  IGNL +L+ LDL  N++   +P EIG L++L+ L    NQ+   +P  IG L  +  L++  NNL   +P  +G+L +L N Y N N   + +P  L    +L  +++     S +IPP
Sbjct:  486 NLEILILSNNMLKKI-PNTIGNLRRLRILDLEENRIE-TLPHEIGLLHELQRLILQTNQIT-MLPRSIGHLGNLTHLSVSENNLQ-FLPEEIGSLESLENLYINQNPGLEKLPFELALCQNLKYLNIDKCPLS-TIPP 618          
BLAST of EY665739 vs. ExPASy Swiss-Prot
Match: Y4374_ARATH (Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 47/126 (37.30%), Postives = 62/126 (49.21%), Query Frame = 2
Query:  104 GIIPPQ-IGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLKPN-QFSGSIP 475
            G IPP  I  LS L+ L L SN +SG  P +   L  L  LY   N L G +P +      +  + L +N   G+IPSSL  L  + +    NN+L   IP  L  L+SL  +DL  N   +G IP
Sbjct:   82 GQIPPNTISRLSALRVLSLRSNLISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSVWKNLTSVNLSNNGFNGTIPSSLSRLKRIQSLNLANNTLSGDIP-DLSVLSSLQHIDLSNNYDLAGPIP 206          
BLAST of EY665739 vs. ExPASy Swiss-Prot
Match: Y3868_ARATH (Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 51/134 (38.06%), Postives = 70/134 (52.24%), Query Frame = 2
Query:   77 LNLSFNIFFGIIPPQ-IGNLSKLQYLDLGSNQLSGVIPPEIGHLNQLRILYFDVNQLHGSIPPEIGQLSLINVLALCHNNLYGSIPSSLGNLSNLANFYFNNNSLFDSIPLVLGNLNSLSTMDLKPNQFSGSIP 475
            L L  +  +G +P +    L  L+ + L SN L G IP  I  L  +R LYF  N   G+IPP +    L+N L L  N+L G+IP+SL NL+ L +    NNSL   IP +   L  L   +L  N  +GS+P
Sbjct:   72 LRLPGSGLYGPLPEKTFEKLDALRIISLRSNHLQGNIPSVILSLPFIRSLYFHENNFSGTIPPVLSH-RLVN-LDLSANSLSGNIPTSLQNLTQLTDLSLQNNSLSGPIPNLPPRLKYL---NLSFNNLNGSVP 200          
The following BLAST results are available for this feature:
BLAST of EY665739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
SHOC2_NEMVE5.460e-1138.28Leucine-rich repeat protein soc-2 homolog OS=Nemat... [more]
SUR8_DROAN7.131e-1135.51Leucine-rich repeat protein soc-2 homolog OS=Droso... [more]
Y4374_ARATH9.313e-1137.30Probable inactive receptor kinase At4g23740 OS=Ara... [more]
Y3868_ARATH9.313e-1138.06Probable inactive receptor kinase At3g08680 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665739 ID=EY665739; Name=EY665739; organism=Citrus sinensis; type=EST; length=875bp
CATTAACCTCAGCTCTATGCCTTTAAATGGTACGCTCCAAGAATTTGCAT
TCTCATCCTTTCCTCATCTTGAGCAACTTAACCTCAGCTTCAATATATTC
TTTGGTATCATCCCCCCTCAAATCGGTAACCTTTCCAAGCTTCAGTATCT
TGATTTAGGCAGTAATCAATTATCTGGGGTAATACCACCAGAAATTGGTC
ACTTAAATCAATTGAGGATACTTTACTTTGATGTGAATCAGTTGCATGGT
TCAATACCTCCAGAAATAGGCCAGTTAAGTCTTATTAATGTTCTTGCCTT
GTGTCATAATAATTTGTATGGTTCTATTCCTTCTTCTTTGGGTAACCTAA
GCAACTTGGCTAATTTTTACTTTAATAATAATTCCCTTTTTGACTCCATT
CCTTTAGTTTTGGGAAATTTAAACTCTCTTTCCACTATGGACTTAAAGCC
AAATCAATTCAGTGGCTCCATCCCCCCTTTCCCTTAGGTAACTTAAGTAA
ACTTGGGGAATAATTGGATCTTTAATTCAAATTCATTTTCTGGGTTCAAT
TCCCTCGATTAATAGGAACTTTGAAGGCTCTTCTCCAACTAAAATTGAGT
GGAAAACAACTTAATGGGTTCAATCCCCCCTTTCCCTTTGGAAATTTAAA
CCAGGGTGGAACTTGGAGGCCCCAAATTAAAAAATTGGCTTTCGGGGTTC
CCTCCCCCCCCTTCCAAGAAAACTTGGAAATGCCTTTTTGGGATTAGGGG
GGGGAAATAAAACAAAACCAAGGGGGGGGAATCCTTTCTTAATTGGGAAA
ATATAACGGGCTAAAAAAGTTTAAAAACTTTAAAAACAGGGGGGGTGTGG
GAGGTTTGGCCCTCCGAGAAAAAGA
back to top