CN186251

Overview
NameCN186251
Unique NameCN186251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.314e-15
Identity = 50/143 (34.97%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  303 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731
            R+L++G+L   + E  I  +F   G   S K+I    +N  + Y F+EF  H  A   L   NG ++   E   ++NWAT  + +++ D    F +FVGDL+ ++T   ++  F A +  +  A+VV D  TG+SKGYGFV F
Sbjct:    9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSF 145          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.822e-15
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  309 LWIGDLQPWMEESYIASIFGHTGEF-VSGKVIRNKQTNF----------SEGYGFIEFVSHAAAERVLQTFNGTQMPS-TEQNFRLNWATYGAGERRQD-----DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 749
            L++GDL P  +++ +  I+   GE  ++ +++ N   N           ++GY F++F S   A   L   NG  +P+   +  +LNWAT               G + +IFVGDLA +VT+  L E F   Y+S   AK+V D+ TG SKGYGFV+F +  EQ
Sbjct:   56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQ 218          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 47/145 (32.41%), Postives = 79/145 (54.48%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE 740
            SL++GDL+P + E+++  IF   G   S +V R+  T  S GY ++ F  H A  + ++  N T  P   +  R+ W+      R++  G    IF+ +L  D+ +  L +TF +V+  +  +K+ TD   G+SKG+GFV F +E
Sbjct:   39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYT--PIKGRLCRIMWSQRDPSLRKKGSG---NIFIKNLHPDIDNKALYDTF-SVFGDILSSKIATDE-NGKSKGFGFVHFEEE 176          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.897e-14
Identity = 51/148 (34.46%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  309 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGER--RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 746
            L++G+L   ++   +A IF   G     +VI N++T+ S G+GF+   +   AE+ ++  NG  M   +       A  G+ ER  R D  P   ++VG+L  DV    L++ F + +  V  A+VV+DR TGRS+G+GFV    ESE
Sbjct:   57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLF-SEHGKVVSARVVSDRETGRSRGFGFVTMSSESE 202          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.897e-14
Identity = 48/145 (33.10%), Postives = 81/145 (55.86%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE 740
            SL++GDL P + E+++  IF   G   S +V R+  T  S GY ++ F  H AA+  ++  N T  P   +  R+ W+      R++  G    IF+ +L  D+ +  L +TF +V+ ++  +KV TD  TG+SKG+G+V F ++
Sbjct:   36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFT--PIKGKLCRIMWSQRDPSLRKKGAG---NIFIKNLHPDIDNKALYDTF-SVFGNILSSKVATDE-TGKSKGFGYVHFEED 173          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.226e-14
Identity = 52/158 (32.91%), Postives = 79/158 (50.00%), Query Frame = 3
Query:  303 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR--------NKQTNFS-------EGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731
            R+L++G+L   + E  I  +F   G   S K+I         N    FS       + Y F+EF  H  A   L   NG ++   E   ++NWAT  + +++ D    F +FVGDL+ ++T   ++  F A +  +  A+VV D  TG+SKGYGFV F
Sbjct:    9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSF 162          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.739e-13
Identity = 48/153 (31.37%), Postives = 79/153 (51.63%), Query Frame = 3
Query:  303 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731
            ++L++G+L   + E+ I  +F   G   + K+I +   N  + Y F+EF  H  A   L   NG ++   E   ++NWAT  + +++          Q     F +FVGDL+ ++T   ++  F A +  +  A+VV D  TG+SKGYGFV F
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSF 154          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.739e-13
Identity = 48/153 (31.37%), Postives = 79/153 (51.63%), Query Frame = 3
Query:  303 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731
            ++L++G+L   + E+ I  +F   G   + K+I +   N  + Y F+EF  H  A   L   NG ++   E   ++NWAT  + +++          Q     F +FVGDL+ ++T   ++  F A +  +  A+VV D  TG+SKGYGFV F
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSF 154          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.359e-12
Identity = 45/147 (30.61%), Postives = 78/147 (53.06%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 746
            SL++G+L+P + E+ +  IF   G   S +V R+  TN S GY ++ F  H A  + ++  N T +    +  R+ W+      R++  G    I++ +L   + +  L ETF + + ++   KV TD   G S+G+GFV F +ES+
Sbjct:   39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKG--KPCRIMWSQRDPSLRKKGSG---NIYIKNLHPAIDNKSLHETF-STFGNILSCKVATDE-NGVSRGFGFVHFENESD 178          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.319e-12
Identity = 46/152 (30.26%), Postives = 78/152 (51.32%), Query Frame = 3
Query:  276 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731
            AP+AS     SL++G+L P + E+ +  +F   G+  S +V R+  T  S GY ++ + + A  ER L+  N T +    +  R+ W+      R+   G    +F+ +L + + +  L +TF A + ++   KV  D   G SKGYGFV +
Sbjct:   40 APNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHY 184          
The following BLAST results are available for this feature:
BLAST of CN186251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
TIAR_HUMAN1.314e-1534.97Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
NAM8_YEAST3.822e-1534.15Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
PABP_YEAST8.515e-1532.41Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ROC1_SPIOL1.897e-1434.4628 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
PABP_CANGA1.897e-1433.10Polyadenylate-binding protein, cytoplasmic and nuc... [more]
TIAR_MOUSE4.226e-1432.91Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
TIA1_MOUSE2.739e-1331.37Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN2.739e-1331.37Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
PABP_ASHGO1.359e-1230.61Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPOR2.319e-1230.26Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186251 ID=CN186251; Name=CN186251; organism=Citrus sinensis; type=EST; length=762bp
GCAGGCTCTCTTCTAGGGCTCAGTTTACCCTCTTCATCGGATCTCGAAAA
TCAATTAATAACGCTTTAGTAATTGATATAACGATGATGCAACAACCGCC
ATCACAGCCTTCCGATCAGACTAGCCAGTACCAGCAGCAACATCAGCAGT
GGATGGCGTATCAACAGCAGTCGCAGCAGCAGCAACAACAACATCAAACT
CCGGTGCCACCTCCGGTTGGATGGACTCCGCAGCCGGTGCCTCCTCCATC
TCAGCAGACGCAGCCCTACGGTGTCGCCCCCGATGCTTCCTCCGACGGGA
TCCGTTCTTTGTGGATCGGAGACTTGCAGCCGTGGATGGAGGAGAGTTAT
ATCGCCAGCATCTTCGGCCATACTGGAGAGTTTGTTTCAGGAAAGGTTAT
TCGCAACAAGCAAACAAATTTTTCAGAGGGTTATGGTTTTATTGAGTTTG
TTAGTCATGCTGCTGCAGAGAGGGTTTTGCAGACTTTTAATGGCACCCAA
ATGCCAAGCACTGAGCAAAACTTCAGACTGAATTGGGCAACCTATGGGGC
TGGTGAGAGGCGTCAAGATGATGGTCCTGATTTTACAATTTTTGTGGGAG
ATTTGGCTGCCGATGTAACTGACTATGTGCTACAAGAAACATTTAGAGCT
GTCTACTCGTCAGTGAAGGGTGCTAAAGTGGTCACTGATAGAACCACTGG
ACGCTCTAAGGGGTATGGTTTTGTGAGATTTGGGGATGAAAGTGAACAAT
TGCGTTCCATGA
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