CN186251

Overview
NameCN186251
Unique NameCN186251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 45/151 (29.80%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  279 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731
            P A+     SL++G+L P + E+ +  +F   G+  S +V R+  T  S GY ++ + + A  ER L+  N T +    +  R+ W+      R+   G    +F+ +L A + +  L +TF A + ++   KV  D   G SKGYGFV +
Sbjct:   44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHY 187          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 51/161 (31.68%), Postives = 78/161 (48.45%), Query Frame = 3
Query:  279 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            P A S  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++
Sbjct:    3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 155          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE 740
            SL+ GDL P + E+++  +F H    VS +V R+ Q   S GY +I F +   A R ++  N T  P  ++  R+  +      R    G    IF+ +L A + +  L ETF + + ++   KV  D  TGRSKGYGFV+F  E
Sbjct:   50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYT--PLFDRPIRIMLSNRDPSTRLSGKG---NIFIKNLDASIDNKALFETFSS-FGTILSCKVAMD-VTGRSKGYGFVQFEKE 186          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 51/161 (31.68%), Postives = 78/161 (48.45%), Query Frame = 3
Query:  279 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            P A S  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++
Sbjct:    3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 155          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 51/161 (31.68%), Postives = 78/161 (48.45%), Query Frame = 3
Query:  279 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            P A S  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++
Sbjct:    3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 155          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 51/161 (31.68%), Postives = 78/161 (48.45%), Query Frame = 3
Query:  279 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            P A S  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++
Sbjct:    3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 155          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 51/161 (31.68%), Postives = 78/161 (48.45%), Query Frame = 3
Query:  279 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            P A S  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++
Sbjct:    3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 155          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 40/137 (29.20%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  336 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 746
            M +  + S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E
Sbjct:   50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 178          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 46/159 (28.93%), Postives = 83/159 (52.20%), Query Frame = 3
Query:  273 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 746
            +A D   D G  +L +  L   M +  + S+F   GE  S K+IR+K    S GYGF+ +V+   AER + T NG ++ S  +  ++++A   +   +     D  +++  L   +T   +++ F + +  +  ++V+ D+TTG S+G  F+RF   SE
Sbjct:    9 MAEDCRGDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSE 159          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 46/159 (28.93%), Postives = 83/159 (52.20%), Query Frame = 3
Query:  273 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 746
            +A D   D G  +L +  L   M +  + S+F   GE  S K+IR+K    S GYGF+ +V+   AER + T NG ++ S  +  ++++A   +   +     D  +++  L   +T   +++ F + +  +  ++V+ D+TTG S+G  F+RF   SE
Sbjct:    9 MAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSE 159          
The following BLAST results are available for this feature:
BLAST of CN186251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PABP_NEOFI8.812e-1229.80Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPB_XENLA8.812e-1231.68Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABP3_ARATH8.812e-1234.48Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP1_RAT8.812e-1231.68Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE8.812e-1231.68Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP1_HUMAN8.812e-1231.68Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN8.812e-1231.68Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
ELAV2_RAT8.812e-1229.20ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ELAV1_MOUSE8.812e-1228.93ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
ELAV1_HUMAN8.812e-1228.93ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186251 ID=CN186251; Name=CN186251; organism=Citrus sinensis; type=EST; length=762bp
GCAGGCTCTCTTCTAGGGCTCAGTTTACCCTCTTCATCGGATCTCGAAAA
TCAATTAATAACGCTTTAGTAATTGATATAACGATGATGCAACAACCGCC
ATCACAGCCTTCCGATCAGACTAGCCAGTACCAGCAGCAACATCAGCAGT
GGATGGCGTATCAACAGCAGTCGCAGCAGCAGCAACAACAACATCAAACT
CCGGTGCCACCTCCGGTTGGATGGACTCCGCAGCCGGTGCCTCCTCCATC
TCAGCAGACGCAGCCCTACGGTGTCGCCCCCGATGCTTCCTCCGACGGGA
TCCGTTCTTTGTGGATCGGAGACTTGCAGCCGTGGATGGAGGAGAGTTAT
ATCGCCAGCATCTTCGGCCATACTGGAGAGTTTGTTTCAGGAAAGGTTAT
TCGCAACAAGCAAACAAATTTTTCAGAGGGTTATGGTTTTATTGAGTTTG
TTAGTCATGCTGCTGCAGAGAGGGTTTTGCAGACTTTTAATGGCACCCAA
ATGCCAAGCACTGAGCAAAACTTCAGACTGAATTGGGCAACCTATGGGGC
TGGTGAGAGGCGTCAAGATGATGGTCCTGATTTTACAATTTTTGTGGGAG
ATTTGGCTGCCGATGTAACTGACTATGTGCTACAAGAAACATTTAGAGCT
GTCTACTCGTCAGTGAAGGGTGCTAAAGTGGTCACTGATAGAACCACTGG
ACGCTCTAAGGGGTATGGTTTTGTGAGATTTGGGGATGAAAGTGAACAAT
TGCGTTCCATGA
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