CN186251
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11 Identity = 45/152 (29.61%), Postives = 77/152 (50.66%), Query Frame = 3 Query: 276 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731 AP A+ SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++ KV D G SKGYGFV + Sbjct: 45 APAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHY 189
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11 Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 3 Query: 285 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 A+ G SL++GDL + +S + FG G V+ +V R+ T S GYG++ F + A R +Q N +P + R+ ++ RR G IF+ +L + L +TF + + ++ KV D ++G+SKGYGFV++ +E +++ Sbjct: 30 ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN--YIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-FGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAI 181
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11 Identity = 51/161 (31.68%), Postives = 77/161 (47.83%), Query Frame = 3 Query: 279 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 P A S + SL++GDL P E+ + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ R+ G IF+ +L + + L +TF A + ++ KVV D SKGYGFV F + R++ Sbjct: 3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 155
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11 Identity = 42/147 (28.57%), Postives = 75/147 (51.02%), Query Frame = 3 Query: 306 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 746 SL++G+L P + E+ + +F G S +V R+ T S GY ++ + + A ++ +Q N ++ + R+ W+ R++ G IF+ +L + + L ETF + + V KV D G S+G+GFV F +ES+ Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEI--NGRPCRIMWSERDPAIRKKGSG---NIFIKNLHPAIDNKALHETF-STFGEVLSCKVALDE-NGNSRGFGFVHFKEESD 190
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11 Identity = 45/152 (29.61%), Postives = 75/152 (49.34%), Query Frame = 3 Query: 276 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731 A + + SL++G+L P + E+ + IF G+ S +V R+ T S GY ++ F HA R ++ N + + + R+ W+ RR DG IF+ +L + + L +TF A + + KV TD G+SK +GFV + Sbjct: 49 AGEEGEEASASLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDG--RPCRIMWSQRDPSLRRNGDG---NIFIKNLHPAIDNKALHDTFSA-FGRILSCKVATDE-LGQSKCFGFVHY 193
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11 Identity = 50/162 (30.86%), Postives = 80/162 (49.38%), Query Frame = 3 Query: 279 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG------PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 746 P+ S + L++G+L + +A +F G +VI N++T+ S G+GF+ S AE ++ FN + N RL A + + P F ++VG+L DV + L++ F + + V A+VV DR TGRS+G+GFV D E Sbjct: 144 PEPSEEA--KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDL-----NGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11 Identity = 49/152 (32.24%), Postives = 75/152 (49.34%), Query Frame = 3 Query: 282 DASSDG--IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731 +AS G + SL++GDL P + E+ + F G +S +V R+ T S GY +I F A AER L T N + Q R+ W+ G R+ G IF+ +L + + L +TF + + ++ KV D S+G+GFV F Sbjct: 2 NASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYDTF-STFGNILSCKVACDE--HGSRGFGFVHF 145
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11 Identity = 48/154 (31.17%), Postives = 76/154 (49.35%), Query Frame = 3 Query: 300 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 + SL++GDL P + E+ + F G +S +V R+ T S GY +I F A AER L T N + + R+ W+ G R+ G +F+ +L + + L +TF A + ++ KVV D S+GYGFV F + R++ Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTFSA-FGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAI 155
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11 Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 3 Query: 306 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE 740 SL++GDL + ES + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ RR G +F+ +L + + + +TF A + ++ KV TD G SKGYGFV F E Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLV--RNKPIRIMWSQRDPSLRRSGVG---NVFIKNLDRAIDNKAIYDTFSA-FGNILSCKVATDE-KGNSKGYGFVHFETE 140
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11 Identity = 49/154 (31.82%), Postives = 75/154 (48.70%), Query Frame = 3 Query: 300 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 + SL+IGDL P + E+ + F G +S +V R+ T S GY +I F A AER L T N + + R+ W+ G R+ G +F+ +L + + L +TF A + + KVV D S+GYGFV F + R++ Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDDSIDNKALYDTFSA-FGDILSCKVVCDEY--GSRGYGFVHFETQEAANRAI 155 The following BLAST results are available for this feature:
BLAST of CN186251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN186251 ID=CN186251; Name=CN186251; organism=Citrus sinensis; type=EST; length=762bpback to top |