CN186251

Overview
NameCN186251
Unique NameCN186251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11
Identity = 45/152 (29.61%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  276 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731
            AP A+     SL++G+L P + E+ +  +F   G+  S +V R+  T  S GY ++ + + A  ER L+  N T +    +  R+ W+      R+   G    +F+ +L + + +  L +TF A + ++   KV  D   G SKGYGFV +
Sbjct:   45 APAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHY 189          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11
Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 3
Query:  285 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            A+  G  SL++GDL   + +S +   FG  G  V+ +V R+  T  S GYG++ F +   A R +Q  N   +P   +  R+ ++      RR   G    IF+ +L   +    L +TF + + ++   KV  D ++G+SKGYGFV++ +E    +++
Sbjct:   30 ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN--YIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-FGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAI 181          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 51/161 (31.68%), Postives = 77/161 (47.83%), Query Frame = 3
Query:  279 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            P A S  + SL++GDL P   E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++
Sbjct:    3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 155          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 42/147 (28.57%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 746
            SL++G+L P + E+ +  +F   G   S +V R+  T  S GY ++ +  + A ++ +Q  N  ++    +  R+ W+      R++  G    IF+ +L   + +  L ETF + +  V   KV  D   G S+G+GFV F +ES+
Sbjct:   51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEI--NGRPCRIMWSERDPAIRKKGSG---NIFIKNLHPAIDNKALHETF-STFGEVLSCKVALDE-NGNSRGFGFVHFKEESD 190          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 45/152 (29.61%), Postives = 75/152 (49.34%), Query Frame = 3
Query:  276 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731
            A +   +   SL++G+L P + E+ +  IF   G+  S +V R+  T  S GY ++ F  HA   R ++  N + +    +  R+ W+      RR  DG    IF+ +L   + +  L +TF A +  +   KV TD   G+SK +GFV +
Sbjct:   49 AGEEGEEASASLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDG--RPCRIMWSQRDPSLRRNGDG---NIFIKNLHPAIDNKALHDTFSA-FGRILSCKVATDE-LGQSKCFGFVHY 193          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 50/162 (30.86%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  279 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG------PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 746
            P+ S +    L++G+L   +    +A +F   G     +VI N++T+ S G+GF+   S   AE  ++ FN   +     N RL      A    + +       P F ++VG+L  DV +  L++ F + +  V  A+VV DR TGRS+G+GFV   D  E
Sbjct:  144 PEPSEEA--KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDL-----NGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 49/152 (32.24%), Postives = 75/152 (49.34%), Query Frame = 3
Query:  282 DASSDG--IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731
            +AS  G  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY +I F   A AER L T N   +    Q  R+ W+    G R+   G    IF+ +L   + +  L +TF + + ++   KV  D     S+G+GFV F
Sbjct:    2 NASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYDTF-STFGNILSCKVACDE--HGSRGFGFVHF 145          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 48/154 (31.17%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  300 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY +I F   A AER L T N   +    +  R+ W+    G R+   G    +F+ +L   + +  L +TF A + ++   KVV D     S+GYGFV F  +    R++
Sbjct:   10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTFSA-FGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAI 155          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11
Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE 740
            SL++GDL   + ES +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      RR   G    +F+ +L   + +  + +TF A + ++   KV TD   G SKGYGFV F  E
Sbjct:    3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLV--RNKPIRIMWSQRDPSLRRSGVG---NVFIKNLDRAIDNKAIYDTFSA-FGNILSCKVATDE-KGNSKGYGFVHFETE 140          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11
Identity = 49/154 (31.82%), Postives = 75/154 (48.70%), Query Frame = 3
Query:  300 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            + SL+IGDL P + E+ +   F   G  +S +V R+  T  S GY +I F   A AER L T N   +    +  R+ W+    G R+   G    +F+ +L   + +  L +TF A +  +   KVV D     S+GYGFV F  +    R++
Sbjct:   10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDDSIDNKALYDTFSA-FGDILSCKVVCDEY--GSRGYGFVHFETQEAANRAI 155          
The following BLAST results are available for this feature:
BLAST of CN186251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PABP_ASPNC1.151e-1129.61Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP2_ARATH1.151e-1129.56Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP1_PONAB1.503e-1131.68Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP_KLULA2.564e-1128.57Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICGU3.349e-1129.61Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ROC3_ARATH4.373e-1130.8631 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
PAP1L_HUMAN4.373e-1132.24Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
EPAB_XENTR4.373e-1131.17Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP_DROME5.712e-1133.10Polyadenylate-binding protein OS=Drosophila melano... [more]
EPABB_XENLA5.712e-1131.82Embryonic polyadenylate-binding protein B OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186251 ID=CN186251; Name=CN186251; organism=Citrus sinensis; type=EST; length=762bp
GCAGGCTCTCTTCTAGGGCTCAGTTTACCCTCTTCATCGGATCTCGAAAA
TCAATTAATAACGCTTTAGTAATTGATATAACGATGATGCAACAACCGCC
ATCACAGCCTTCCGATCAGACTAGCCAGTACCAGCAGCAACATCAGCAGT
GGATGGCGTATCAACAGCAGTCGCAGCAGCAGCAACAACAACATCAAACT
CCGGTGCCACCTCCGGTTGGATGGACTCCGCAGCCGGTGCCTCCTCCATC
TCAGCAGACGCAGCCCTACGGTGTCGCCCCCGATGCTTCCTCCGACGGGA
TCCGTTCTTTGTGGATCGGAGACTTGCAGCCGTGGATGGAGGAGAGTTAT
ATCGCCAGCATCTTCGGCCATACTGGAGAGTTTGTTTCAGGAAAGGTTAT
TCGCAACAAGCAAACAAATTTTTCAGAGGGTTATGGTTTTATTGAGTTTG
TTAGTCATGCTGCTGCAGAGAGGGTTTTGCAGACTTTTAATGGCACCCAA
ATGCCAAGCACTGAGCAAAACTTCAGACTGAATTGGGCAACCTATGGGGC
TGGTGAGAGGCGTCAAGATGATGGTCCTGATTTTACAATTTTTGTGGGAG
ATTTGGCTGCCGATGTAACTGACTATGTGCTACAAGAAACATTTAGAGCT
GTCTACTCGTCAGTGAAGGGTGCTAAAGTGGTCACTGATAGAACCACTGG
ACGCTCTAAGGGGTATGGTTTTGTGAGATTTGGGGATGAAAGTGAACAAT
TGCGTTCCATGA
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