CN186251

Overview
NameCN186251
Unique NameCN186251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = 3
Query:  279 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            P A S  + SL++GDL   + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++
Sbjct:    3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 155          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 41/153 (26.80%), Postives = 78/153 (50.98%), Query Frame = 3
Query:  288 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 746
            + D   +L +  L   M +    S+FG  GE  S K++R+K T  S GYGF+ +V    A++ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +    +++ F + Y  +  ++++ D+ TG S+G GF+RF    E
Sbjct:   29 ADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSSLPKTMNQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 173          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 44/159 (27.67%), Postives = 82/159 (51.57%), Query Frame = 3
Query:  273 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNF-SEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 746
            V  + + D   +L +  L   M +  + S+FG  GE  S K++R+K T   S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E
Sbjct:   56 VESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 206          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 42/142 (29.58%), Postives = 73/142 (51.41%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 731
            SL++G+L P + E+ +  +F   G+  S +V R+  T  S GY ++ + + A  ER L+  N T +    +  R+ W+      R+   G    +F+ +L + + +  L +TF A + ++   KV  D   G SKGYGFV +
Sbjct:   52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHY 186          
The following BLAST results are available for this feature:
BLAST of CN186251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PABPA_XENLA7.460e-1131.06Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
ELAV3_XENLA7.460e-1126.80ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ELAV2_XENLA7.460e-1127.67ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
PABP_ASPCL9.743e-1129.58Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186251 ID=CN186251; Name=CN186251; organism=Citrus sinensis; type=EST; length=762bp
GCAGGCTCTCTTCTAGGGCTCAGTTTACCCTCTTCATCGGATCTCGAAAA
TCAATTAATAACGCTTTAGTAATTGATATAACGATGATGCAACAACCGCC
ATCACAGCCTTCCGATCAGACTAGCCAGTACCAGCAGCAACATCAGCAGT
GGATGGCGTATCAACAGCAGTCGCAGCAGCAGCAACAACAACATCAAACT
CCGGTGCCACCTCCGGTTGGATGGACTCCGCAGCCGGTGCCTCCTCCATC
TCAGCAGACGCAGCCCTACGGTGTCGCCCCCGATGCTTCCTCCGACGGGA
TCCGTTCTTTGTGGATCGGAGACTTGCAGCCGTGGATGGAGGAGAGTTAT
ATCGCCAGCATCTTCGGCCATACTGGAGAGTTTGTTTCAGGAAAGGTTAT
TCGCAACAAGCAAACAAATTTTTCAGAGGGTTATGGTTTTATTGAGTTTG
TTAGTCATGCTGCTGCAGAGAGGGTTTTGCAGACTTTTAATGGCACCCAA
ATGCCAAGCACTGAGCAAAACTTCAGACTGAATTGGGCAACCTATGGGGC
TGGTGAGAGGCGTCAAGATGATGGTCCTGATTTTACAATTTTTGTGGGAG
ATTTGGCTGCCGATGTAACTGACTATGTGCTACAAGAAACATTTAGAGCT
GTCTACTCGTCAGTGAAGGGTGCTAAAGTGGTCACTGATAGAACCACTGG
ACGCTCTAAGGGGTATGGTTTTGTGAGATTTGGGGATGAAAGTGAACAAT
TGCGTTCCATGA
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