CN186245

Overview
NameCN186245
Unique NameCN186245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 47/142 (33.10%), Postives = 70/142 (49.30%), Query Frame = 2
Query:  122 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 547
            F  +L SL + +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:    5 FGNLLKSL-IGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 53/181 (29.28%), Postives = 80/181 (44.20%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK*SK 691
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   +R  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL               ++R    ++ S     G G  EG  WLS  I+  K
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--------------HSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQK 181          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 51/178 (28.65%), Postives = 81/178 (45.51%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK 682
            ++E +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER +E+  EL  +L+++ L +   L+  NK D+P A +  E+   LGL               ++R  + ++ +     G G  EG +WLS  +K
Sbjct:   15 KREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGL--------------HSLRHRQWYIQATCATSGDGLYEGLEWLSTNLK 178          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 51/181 (28.18%), Postives = 81/181 (44.75%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK*SK 691
            +K+ +IL +GLD AGKTT+L+ +K   +V   PT     E +    I F  +D+GG    R +W                   ER  +++ EL  ++++E L +   L+  NK D+P A S  E+   L L              + +R    F+ S     G G  EGF WL+ ++  +K
Sbjct:   15 KKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHL--------------NTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNNAK 181          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 51/176 (28.98%), Postives = 75/176 (42.61%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 682
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL +               R   +         G  EG  WLS  +K
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRN------------RSWYIQATCATSGDGLYEGLDWLSNQLK 178          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 53/181 (29.28%), Postives = 80/181 (44.20%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK*SK 691
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL               ++R    ++ +     G G  EG  WLS  +K  K
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGL--------------HSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQK 181          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 53/181 (29.28%), Postives = 80/181 (44.20%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK*SK 691
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL               ++R    ++ +     G G  EG  WLS  +K  K
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGL--------------HSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQK 181          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 53/174 (30.46%), Postives = 79/174 (45.40%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLS 670
            +K+ +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   +R  E++REL  +L ++ L +   L+  NK D+P A +  EL          T K ++N     +R    F+ S     G+G  EG  WLS
Sbjct:   15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAEL----------TDKLRLN----QLRNRHWFIQSTCATQGHGLYEGLDWLS 174          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 53/181 (29.28%), Postives = 80/181 (44.20%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK*SK 691
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL               ++R    ++ +     G G  EG  WLS  +K  K
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGL--------------HSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQK 181          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 52/174 (29.89%), Postives = 77/174 (44.25%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLS 670
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL               ++R    ++ S     G G  EG  WLS
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--------------HSLRQRHWYIQSTCATSGEGLYEGLDWLS 174          
The following BLAST results are available for this feature:
BLAST of CN186245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
ARF3_BOVIN2.702e-1233.10ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF1_SOLTU2.702e-1229.28ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF1_SCHPO2.702e-1228.65ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF1_PLAFA2.702e-1228.18ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF12_CAEBR2.702e-1228.98ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF2_RAT3.529e-1229.28ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE3.529e-1229.28ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_DROME3.529e-1230.46ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF2_BOVIN3.529e-1229.28ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
ARF1_CHLRE3.529e-1229.89ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186245 ID=CN186245; Name=CN186245; organism=Citrus sinensis; type=EST; length=717bp
GAGGGTTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTGAGCCAA
AATTCGATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAA
CCCATGTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCT
CTGGCAAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTA
AAACGACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTTCAACATCAA
CCAACACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTT
TAAGGCTTTTGATTTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAG
ATTACTACGCCAAGGTTGATGCGGTTGTGTACCTGGTAGATGCGTATGAC
AAGGAGAGGTTTGCTGAGTCAAAAAGGGAGCTTGATGCCCTGCTTTCAGA
TGAATCCTTGGCCAATGTTCCATTCCTAATTTTGGGCAACAAAATTGATA
TCCCATATGCTGCATCAGAAGATGAGTTGCGATATCACCTTGGACTGACC
AACTTCACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCAAACGTTCG
TCCCCTTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGGTTACGGAG
AGGGATTTAAGTGGCTGTCTCAGTACATCAAGTAGAGCAAGAAGTAGAAT
TTGTTCGGTTCTTTCTT
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