CN186245

Overview
NameCN186245
Unique NameCN186245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 49/178 (27.53%), Postives = 76/178 (42.70%), Query Frame = 2
Query:  158 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK*SK 691
            +E +IL LGLD AGKTT+L+ L+   +V   PT     E++    +KF+ +DLGG    R  W                   +R   S++EL  +L ++ L      +L NK DI    +E E+   LGL                 R +++F  S  +  G      WL+  ++  K
Sbjct:   15 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLTETEVYKALGLDALRN------------RTIQIFKTSASKGEGLDPAMDWLANQLQQKK 180          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 52/177 (29.38%), Postives = 78/177 (44.07%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYI 679
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   +R  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL               ++R    ++ S     G G  EG  WLS  I
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--------------HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 52/177 (29.38%), Postives = 78/177 (44.07%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYI 679
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   +R  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL               ++R    ++ S     G G  EG  WLS  I
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--------------HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 41/149 (27.52%), Postives = 75/149 (50.34%), Query Frame = 2
Query:  104 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 547
            M  F+       SL  W++E ++  +GL  +GKTTL++++ +   ++   PT     ++++ G +  K +D+GG    R +W                   E+F +SK+ L  L++   LA +P L++ NK D+P +A  DE+  +L L
Sbjct:    1 MNFFESIINFFKSL-FWKQEMELTLVGLQGSGKTTLVNVISNGGFIEDTIPTIGFNMKKVTKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKPPLAKIPLLVVANKNDLPNSAGVDEMIQNLDL 148          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 45/175 (25.71%), Postives = 73/175 (41.71%), Query Frame = 2
Query:  158 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 682
            +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +  R  W                   ER + ++ EL  +L+ E L     LI  NK D+    +  E+   L LT+    +  +              C  +   G  +G +W+   +K
Sbjct:   15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWMMSRLK 177          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 50/176 (28.41%), Postives = 75/176 (42.61%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 682
            ++E +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL +               R   +         G  EG  WLS  +K
Sbjct:   15 KREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRN------------RSWYIQATCATSGDGLYEGLDWLSNQLK 178          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 44/175 (25.14%), Postives = 73/175 (41.71%), Query Frame = 2
Query:  158 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 682
            +E K++ +GLDNAGKTT+L+      +V   PT     EE+ +   +F  +D+GG +  R  W                   ER + ++ EL  +L+ E L     LI  NK D+    +  E+   L LT+    +  +              C  +   G  +G +W+   +K
Sbjct:   15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWMMSRLK 177          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 45/175 (25.71%), Postives = 73/175 (41.71%), Query Frame = 2
Query:  158 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 682
            +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +  R  W                   ER + ++ EL  +L+ E L     LI  NK D+    +  E+   L LT+    +  +              C  +   G  +G +W+   +K
Sbjct:   15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWMMSRLK 177          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 52/179 (29.05%), Postives = 77/179 (43.02%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXE--RFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYI 679
            +KE +IL +GLD AGKTT+L+ L    +V   PT     E +    I F  +D+GG    R +W                   E  R  ++K EL  LL ++ L +   L+  NK D+P A S  +L   LGL                ++  + ++     + G G  +G  WLS YI
Sbjct:   15 KKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGL--------------QELKKRDWYIQPTCARSGDGLYQGLDWLSDYI 179          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 43/131 (32.82%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 547
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGL 145          
The following BLAST results are available for this feature:
BLAST of CN186245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
ARL1_CAEEL4.609e-1227.53ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]
ARF2_ARATH4.609e-1229.38ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_SALBA4.609e-1229.38ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARL8_DICDI6.019e-1227.52ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
ARL5A_HUMAN6.019e-1225.71ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]
ARF12_CAEEL6.019e-1228.41ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARL5A_RAT7.861e-1225.14ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_BOVIN7.861e-1225.71ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]
ARF_GIALA7.861e-1229.05ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF_DUGJA7.861e-1232.82ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186245 ID=CN186245; Name=CN186245; organism=Citrus sinensis; type=EST; length=717bp
GAGGGTTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTGAGCCAA
AATTCGATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAA
CCCATGTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCT
CTGGCAAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTA
AAACGACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTTCAACATCAA
CCAACACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTT
TAAGGCTTTTGATTTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAG
ATTACTACGCCAAGGTTGATGCGGTTGTGTACCTGGTAGATGCGTATGAC
AAGGAGAGGTTTGCTGAGTCAAAAAGGGAGCTTGATGCCCTGCTTTCAGA
TGAATCCTTGGCCAATGTTCCATTCCTAATTTTGGGCAACAAAATTGATA
TCCCATATGCTGCATCAGAAGATGAGTTGCGATATCACCTTGGACTGACC
AACTTCACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCAAACGTTCG
TCCCCTTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGGTTACGGAG
AGGGATTTAAGTGGCTGTCTCAGTACATCAAGTAGAGCAAGAAGTAGAAT
TTGTTCGGTTCTTTCTT
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