CN186245

Overview
NameCN186245
Unique NameCN186245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2662 contig Csv1_Contig2662:496..1213. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.556e-58
Identity = 114/192 (59.38%), Postives = 136/192 (70.83%), Query Frame = 2
Query:  104 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            M+L+ WFY IL++LGL  K  K+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEELS+G +KF  FDLGGHQ ARR+W                   ER  E+K E+DALLS E LA VPF++LGNKID P A SEDELR  LGL   TTGKG+V L    +RP+EVFMCS+V + GYGE  +WLSQY+
Sbjct:    1 MWLWSWFYDILSNLGLLNKHGKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEELAKVPFVVLGNKIDHPEAVSEDELRQRLGLWQ-TTGKGRVPL--EGIRPIEVFMCSVVMRQGYGEAIRWLSQYV 189          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.477e-58
Identity = 117/192 (60.94%), Postives = 135/192 (70.31%), Query Frame = 2
Query:  104 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            M++ +WF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEELSIG ++F  FDLGGH+ ARRVW                   ERF ES+ ELDALL  E L+ VP L+LGNKID   A SE+ELR+ LGL   TTGK KV LV+   RPLEVF CSI  + GYGEG +WLSQYI
Sbjct:    1 MWVLNWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEELSKVPVLVLGNKIDKSTAVSENELRHALGLMT-TTGKDKVQLVEGQ-RPLEVFTCSIYLRQGYGEGIRWLSQYI 190          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.111e-57
Identity = 115/192 (59.90%), Postives = 135/192 (70.31%), Query Frame = 2
Query:  104 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            M++FDWF  ILASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK EL++L   E L+ VPF+ILGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S+V + GYG+ FKWLSQYI
Sbjct:    1 MWIFDWFQDILASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPEGQ-RPIEVFMVSVVMRSGYGDAFKWLSQYI 190          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: SAR1_CANAL (Small COPII coat GTPase SAR1 OS=Candida albicans GN=SAR1 PE=3 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.757e-57
Identity = 115/192 (59.90%), Postives = 135/192 (70.31%), Query Frame = 2
Query:  104 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            M++FDWF  IL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK EL++L   E L+ VPF+ILGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S+V + GYGE FKWLSQYI
Sbjct:    1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPE-GTRPIEVFMVSVVMRSGYGEAFKWLSQYI 190          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.368e-56
Identity = 110/195 (56.41%), Postives = 136/195 (69.74%), Query Frame = 2
Query:  107 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK EL+AL++DE+++NVP LILGNKID   A SE++LR   GL   TTGKG V L + N RP+EVFMCS++++ GYGEGF+WLSQYI
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.368e-56
Identity = 110/195 (56.41%), Postives = 136/195 (69.74%), Query Frame = 2
Query:  107 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK EL+AL++DE+++NVP LILGNKID   A SE++LR   GL   TTGKG V L + N RP+EVFMCS++++ GYGEGF+WLSQYI
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: SAR1A_PIG (GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.334e-56
Identity = 110/195 (56.41%), Postives = 136/195 (69.74%), Query Frame = 2
Query:  107 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK EL+AL++DE+++NVP LILGNKID   A SE++LR   GL   TTGKG V L + N RP+EVFMCS++++ GYGEGF+WLSQYI
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: SAR1A_BOVIN (GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.334e-56
Identity = 110/195 (56.41%), Postives = 136/195 (69.74%), Query Frame = 2
Query:  107 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK EL+AL++DE+++NVP LILGNKID   A SE++LR   GL   TTGKG V L + N RP+EVFMCS++++ GYGEGF+WLSQYI
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 5.200e-56
Identity = 114/192 (59.38%), Postives = 133/192 (69.27%), Query Frame = 2
Query:  104 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            M++FDWF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F  FDLGGHQ ARR+W                   ER AESK EL++L   E L+ VPFLILGNKID   A  E EL+  LGL N TTGK    L +   RP+EVFM S+V +MGYGEGFKWLS +I
Sbjct:    1 MWIFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAELESLFRIEELSQVPFLILGNKIDKSTAIGEMELKSALGLYN-TTGKDVTKLPEGQ-RPIEVFMVSVVMRMGYGEGFKWLSSFI 190          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.791e-56
Identity = 104/191 (54.45%), Postives = 134/191 (70.16%), Query Frame = 2
Query:  107 FLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            FL+DWF G+L  LGL  K+ K++FLGLDNAGKTTLLHMLKD+R+ QH PT HPTSE++S+G I F  +DLGGH  ARRVW                   ER  ES+ EL++LL DE +A+VP LILGNKID P A SED+L++ L + +  TGKG V+  +   RP+EVFMCS++++ GYGEG +WL QY+
Sbjct:    3 FLWDWFNGVLNMLGLANKKGKLVFLGLDNAGKTTLLHMLKDDRIAQHVPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQHMCTGKGDVSRNEMASRPMEVFMCSVLQRQGYGEGIRWLGQYL 193          
The following BLAST results are available for this feature:
BLAST of CN186245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
SAR1_NEUCR5.556e-5859.38Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1_PICPG9.477e-5860.94Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
SAR1_LODEL2.111e-5759.90Small COPII coat GTPase SAR1 OS=Lodderomyces elong... [more]
SAR1_CANAL2.757e-5759.90Small COPII coat GTPase SAR1 OS=Candida albicans G... [more]
SAR1A_PONAB1.368e-5656.41GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_HUMAN1.368e-5656.41GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
SAR1A_PIG2.334e-5656.41GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A P... [more]
SAR1A_BOVIN2.334e-5656.41GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A P... [more]
SAR1_PICGU5.200e-5659.38Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1_CAEEL6.791e-5654.45GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186245 ID=CN186245; Name=CN186245; organism=Citrus sinensis; type=EST; length=717bp
GAGGGTTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTGAGCCAA
AATTCGATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAA
CCCATGTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCT
CTGGCAAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTA
AAACGACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTTCAACATCAA
CCAACACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTT
TAAGGCTTTTGATTTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAG
ATTACTACGCCAAGGTTGATGCGGTTGTGTACCTGGTAGATGCGTATGAC
AAGGAGAGGTTTGCTGAGTCAAAAAGGGAGCTTGATGCCCTGCTTTCAGA
TGAATCCTTGGCCAATGTTCCATTCCTAATTTTGGGCAACAAAATTGATA
TCCCATATGCTGCATCAGAAGATGAGTTGCGATATCACCTTGGACTGACC
AACTTCACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCAAACGTTCG
TCCCCTTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGGTTACGGAG
AGGGATTTAAGTGGCTGTCTCAGTACATCAAGTAGAGCAAGAAGTAGAAT
TTGTTCGGTTCTTTCTT
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