CN186245

Overview
NameCN186245
Unique NameCN186245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = 2
Query:  158 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLT 550
            KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W                   +R  E+++EL  +++D  + +   LI  NK D+P A    E++  LGLT
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 142          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 54/179 (30.17%), Postives = 80/179 (44.69%), Query Frame = 2
Query:  158 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK*SKK 694
            KE KIL LGLD AGKTT+L+ LK  ++    PT     E ++   +KF  +D+GG Q  R +W                    R  E+K EL +++ ++ + NV  L+  NK D+  A    E+   L L        + NL +   +P  V   + +   G  EG  W+S      KK
Sbjct:   16 KEMKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLVWANKQDLKDAMKPQEVSDFLEL--------EKNLKN---QPWCVIGSNALSGQGLVEGLSWISNNTNVPKK 183          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 47/141 (33.33%), Postives = 68/141 (48.23%), Query Frame = 2
Query:  128 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLT 550
            G L S     KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W                   +R  E++ EL  +++D  + +   LI  NK D+P A    E++  LGLT
Sbjct:    2 GKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 142          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 50/175 (28.57%), Postives = 75/175 (42.86%), Query Frame = 2
Query:  158 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 682
            KE +IL +GLD AGKTT+L+ LK   ++   PT     E +    I F  +D+GG    R +W                    R  E++  +  +L+++ L N  +L+  NK D+P A S  E+   LGL +               RP  +         G  EG +WLS  +K
Sbjct:   16 KEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRN------------RPWFIQSTCATSGEGLYEGLEWLSNNLK 178          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 57/175 (32.57%), Postives = 83/175 (47.43%), Query Frame = 2
Query:  158 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 682
            KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   IKF  +D+GG    R +W                    R +E+++EL  ++SD  + +   L+L NK D+P A S  ++   L L      K ++     NV+P     C++    G  EG  WLSQ  K
Sbjct:   20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKL---KDRL----WNVQP----TCALTGD-GLLEGLAWLSQNAK 182          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 56/193 (29.02%), Postives = 86/193 (44.56%), Query Frame = 2
Query:  110 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK 682
            LFD  +G        +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I+F  +D+GG    R +W                   +R  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL              S++R    ++ +     G G  EG  WLS  +K
Sbjct:   11 LFDGLFG--------KKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGL--------------SSLRQRSWYIQATCATTGDGLFEGLDWLSTELK 181          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 53/178 (29.78%), Postives = 80/178 (44.94%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK 682
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +LS++ L +   L+  NK D+P A +  E+   LGL               ++R    ++ +     G G  EG +WLS  +K
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGL--------------HSLRQRSWYIQAACATSGDGLYEGLEWLSANLK 178          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARL11_RAT (ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 47/133 (35.34%), Postives = 64/133 (48.12%), Query Frame = 2
Query:  161 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI-GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNF 556
            +A+++ LGLD AGKTT+L+ LK  RLV   PT     E L   G +    +D+GG    R  W                    R  E+  EL+ +L D ++A VPFL+L NK + P A    E+R  L L  F
Sbjct:   10 KAQVVMLGLDCAGKTTILYKLKGNRLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLEDPNMAGVPFLVLANKQEAPDALPLLEIRNRLDLERF 142          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 54/183 (29.51%), Postives = 77/183 (42.08%), Query Frame = 2
Query:  122 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLS 670
            F+  + SL   +KE +IL +GLD AGK+TLL+ LK   +V   PT     E +    +    +D+GG    R +W                   ER  E K E+D LL  + L     L+  NK D+  A +  E+   L L +    K  V              CS +R  G  EGF W++
Sbjct:   12 FFSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQ------------PCSAIRSDGIYEGFDWVA 182          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARL14_HUMAN (ADP-ribosylation factor-like protein 14 OS=Homo sapiens GN=ARL14 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 54/186 (29.03%), Postives = 90/186 (48.39%), Query Frame = 2
Query:  128 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK-IKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 682
            G L S     K+A++L LGLD+AGK+TLL+ LK  + +   PT     E + + +      +D+GG +  R VW                   +R  ES+R+ + +L +E + NVP ++L NK D+P A + +++          T   KV  + S+ R   V  C  +   G  +GF+ L+ ++K
Sbjct:    2 GSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNFSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVPVVLLANKQDMPGALTAEDI----------TRMFKVKKLCSD-RNWYVQPCCALTGEGLAQGFRKLTGFVK 176          
The following BLAST results are available for this feature:
BLAST of CN186245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
ARF6_CHICK3.192e-1333.59ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF3_YEAST3.192e-1330.17ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARF3_DROME3.192e-1333.33ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF2_YEAST3.192e-1328.57ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF2_SCHPO3.192e-1332.57Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF_NEUCR4.168e-1329.02ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF_CRYNE4.168e-1329.78ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARL11_RAT5.444e-1335.34ADP-ribosylation factor-like protein 11 OS=Rattus ... [more]
ARFJ_DICDI5.444e-1329.51ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARL14_HUMAN7.110e-1329.03ADP-ribosylation factor-like protein 14 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186245 ID=CN186245; Name=CN186245; organism=Citrus sinensis; type=EST; length=717bp
GAGGGTTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTGAGCCAA
AATTCGATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAA
CCCATGTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCT
CTGGCAAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTA
AAACGACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTTCAACATCAA
CCAACACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTT
TAAGGCTTTTGATTTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAG
ATTACTACGCCAAGGTTGATGCGGTTGTGTACCTGGTAGATGCGTATGAC
AAGGAGAGGTTTGCTGAGTCAAAAAGGGAGCTTGATGCCCTGCTTTCAGA
TGAATCCTTGGCCAATGTTCCATTCCTAATTTTGGGCAACAAAATTGATA
TCCCATATGCTGCATCAGAAGATGAGTTGCGATATCACCTTGGACTGACC
AACTTCACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCAAACGTTCG
TCCCCTTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGGTTACGGAG
AGGGATTTAAGTGGCTGTCTCAGTACATCAAGTAGAGCAAGAAGTAGAAT
TTGTTCGGTTCTTTCTT
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