CN186245

Overview
NameCN186245
Unique NameCN186245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2662 contig Csv1_Contig2662:496..1213. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 54/183 (29.51%), Postives = 78/183 (42.62%), Query Frame = 2
Query:  122 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLS 670
            F+  + SL   +K+ +IL +GLD AGK+TLL  LK   +V   PT     E +    +    +D+GG    R +W                   ER  E K E+D LL  + L  +  L+L NK D+  A +  E+   L L +    K  V              CS +R  G  EGF W++
Sbjct:   12 FFSNIFSLFEGKKDTRILMIGLDGAGKSTLLFKLKLGDVVLTIPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQ------------PCSAIRSDGIYEGFDWVA 182          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 51/173 (29.48%), Postives = 75/173 (43.35%), Query Frame = 2
Query:  161 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            E +++ LGLD AGKTT+L  LK +  +Q  PT     E +    +KF  +D+GG    R +W                   +R +E+  EL  LL+++ L +   LI  NK D+  A S +E+   L L     G           R   +  C     MG  EG  WLS+ +
Sbjct:  404 EIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCG-----------RSWYIQGCDARSGMGLYEGLDWLSRQL 565          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 51/173 (29.48%), Postives = 75/173 (43.35%), Query Frame = 2
Query:  161 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            E +++ LGLD AGKTT+L  LK +  +Q  PT     E +    +KF  +D+GG    R +W                   +R +E+  EL  LL+++ L +   LI  NK D+  A S +E+   L L     G           R   +  C     MG  EG  WLS+ +
Sbjct:  404 EIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCG-----------RSWYIQGCDARSGMGLYEGLDWLSRQL 565          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 54/184 (29.35%), Postives = 78/184 (42.39%), Query Frame = 2
Query:  122 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRK-MGYGEGFKWLS 670
            F+  + SL   +K+ +IL +GLD AGK+TLL+ LK   +V   PT     E +    +    +D+GG    R +W                   ER  E K E+D LL  E L  +  LI  NK D+  A +  E+   L L +    K  V              CS ++   G  EGF W++
Sbjct:   12 FFSNIFSLFEGKKQTRILMIGLDGAGKSTLLYKLKLGDIVSTVPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRKWYVQ------------PCSAIKSPHGIYEGFDWVA 183          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 43/131 (32.82%), Postives = 65/131 (49.62%), Query Frame = 2
Query:  158 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLT 550
            KE +IL  GLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W                   +R  E+++EL  +++D  + +   LI  NK D+P A    E++  LGLT
Sbjct:   12 KEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 142          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF5_ARATH (Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 54/175 (30.86%), Postives = 73/175 (41.71%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 679
            +KE +IL +GLDN+GKTT++  +  E      PT     + +   K     +D+GG +  R  W                    R  + K ELD LL +E LA    LIL NK DI  A + DE+   L L +               R  ++  CS     G  EGF WL Q I
Sbjct:   14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALTPDEIGKVLNLESM-----------DKSRHWKIVGCSAYTGEGLLEGFDWLVQDI 177          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 53/178 (29.78%), Postives = 79/178 (44.38%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK 682
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   LI  NK D+P A +  E+   LGL               ++R    ++ +     G G  EG  WLS  +K
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGL--------------HSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 178          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 53/178 (29.78%), Postives = 79/178 (44.38%), Query Frame = 2
Query:  155 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYIK 682
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   LI  NK D+P A +  E+   LGL               ++R    ++ +     G G  EG  WLS  +K
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGL--------------HSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 178          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 48/184 (26.09%), Postives = 79/184 (42.93%), Query Frame = 2
Query:  131 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 682
            IL    L ++E ++L LGLDNAGKTT+L  L +E + +  PT       L +  ++F  +D+GG +  R  W                    R  E +  L  LL +E L     L+L NK D+  A S +E+   L ++ + +   +            +F  S +  +   +   WL+  +K
Sbjct:    6 ILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSHWR------------IFSVSALTGLNIKDAISWLANDLK 177          
BLAST of CN186245 vs. ExPASy Swiss-Prot
Match: ARL14_MOUSE (ADP-ribosylation factor-like protein 14 OS=Mus musculus GN=Arl14 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 57/187 (30.48%), Postives = 88/187 (47.06%), Query Frame = 2
Query:  128 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI-GKIKFKAFDLGGHQIARRVW-XXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 682
            G+L S     K+A IL LGLD+AGK+TLL+ LK    +   PT     E + +   +    +D+GG +  R VW                    +R  +S++E   +L +E + N P +IL NK D+P A S +++          T   KV  + SN R   V  C  V   G  +GF+ L++++K
Sbjct:    2 GLLNSKNPQSKQAHILLLGLDSAGKSTLLYRLKFAETLATIPTIGFNVEMVQLQSSLTLTVWDVGGQEKMRTVWDCYCENAQGLMYVVDCSEGKKRLEDSRKEFKHILKNEHIKNTPVVILANKQDLPGALSAEDI----------TRMFKVKKLCSN-RNWYVQPCCAVTGEGLDDGFRKLTEFLK 177          
The following BLAST results are available for this feature:
BLAST of CN186245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
ARFK_DICDI7.110e-1329.51ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARD1_MOUSE1.213e-1229.48GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN1.213e-1229.48GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARFH_DICDI1.584e-1229.35ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARF6_XENLA1.584e-1232.82ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF5_ARATH1.584e-1230.86Probable ADP-ribosylation factor At2g18390 OS=Arab... [more]
ARF1_LOCMI1.584e-1229.78ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME1.584e-1229.78ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARL_SCHPO2.069e-1226.09ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
ARL14_MOUSE2.069e-1230.48ADP-ribosylation factor-like protein 14 OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186245 ID=CN186245; Name=CN186245; organism=Citrus sinensis; type=EST; length=717bp
GAGGGTTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTGAGCCAA
AATTCGATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAA
CCCATGTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCT
CTGGCAAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTA
AAACGACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTTCAACATCAA
CCAACACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTT
TAAGGCTTTTGATTTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAG
ATTACTACGCCAAGGTTGATGCGGTTGTGTACCTGGTAGATGCGTATGAC
AAGGAGAGGTTTGCTGAGTCAAAAAGGGAGCTTGATGCCCTGCTTTCAGA
TGAATCCTTGGCCAATGTTCCATTCCTAATTTTGGGCAACAAAATTGATA
TCCCATATGCTGCATCAGAAGATGAGTTGCGATATCACCTTGGACTGACC
AACTTCACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCAAACGTTCG
TCCCCTTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGGTTACGGAG
AGGGATTTAAGTGGCTGTCTCAGTACATCAAGTAGAGCAAGAAGTAGAAT
TTGTTCGGTTCTTTCTT
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