CN186244

Overview
NameCN186244
Unique NameCN186244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2662 contig Csv1_Contig2662:594..1343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.810e-55
Identity = 109/195 (55.90%), Postives = 135/195 (69.23%), Query Frame = -3
Query:  169 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 741
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLL MLKD+RL QH PT HPTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK EL+AL++DE+++NVP LILGNKID   A SE++LR   GL   TTGKG V L + N RP+EVFMCS++++ GYGEGF+WLSQYI
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.068e-54
Identity = 112/185 (60.54%), Postives = 130/185 (70.27%), Query Frame = -3
Query:  169 YGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 723
            + +L+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEELSIG +KF  FDLGGH  ARR+W                   ER  ESK ELDALL+ E L N PF+ILGNKID P A SED+LR  LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:    4 WDVLSSLGLMNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKNTPFVILGNKIDHPEAVSEDQLRATLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 185          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.299e-54
Identity = 112/190 (58.95%), Postives = 127/190 (66.84%), Query Frame = -3
Query:  169 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 738
            LF WF  IL+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++ ELDAL   + L NVPF +LGNKID P A SE ELR  LGL N TTG  K+       RP+E+FMCS+V K GY E FKWLS+YI
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKELDNVPFAVLGNKIDSPSAVSETELRAALGLMN-TTGYTKI----EGQRPIELFMCSVVMKSGYSEAFKWLSEYI 190          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.652e-53
Identity = 111/190 (58.42%), Postives = 126/190 (66.32%), Query Frame = -3
Query:  169 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 738
            LF WF  IL+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++ ELDAL     L  VPF+ILGNKID P A SE ELR  LGL N TTG  ++       RP+E+FMCS+V K GY E F+WLSQYI
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGSIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADSERFNEARVELDALFQIPELKTVPFVILGNKIDAPSAVSETELRAALGLLN-TTGDARI----EGQRPVELFMCSVVMKSGYLEAFQWLSQYI 190          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.993e-53
Identity = 110/190 (57.89%), Postives = 128/190 (67.37%), Query Frame = -3
Query:  169 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 738
            +F WF  +LASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++ ELDAL +   L +VPF+ILGNKID P A SE ELR  LGL N TTG  ++       RP+EVFMCS+V + GY E F+WLSQYI
Sbjct:    6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.885e-51
Identity = 108/190 (56.84%), Postives = 127/190 (66.84%), Query Frame = -3
Query:  169 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 738
            +F WF  +LASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF  FDLGGH  ARR+W                   +RF E++ ELDAL +   L +VPF+ILGNKID   A SE ELR  LGL N TTG  ++       RP+EVFMCS+V + GY E F+WLSQYI
Sbjct:    5 VFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITELKDVPFVILGNKIDAANAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 189          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.971e-44
Identity = 90/188 (47.87%), Postives = 119/188 (63.30%), Query Frame = -3
Query:  169 DWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 732
            DWF   L+ LGL++K+A I+F+GLDNAGK+TLL MLK+       PTQ PTS+EL +G I+FK FDLGGH++AR++W                    RF ES+R L  LL +  LA  P LIL NK+DI  A S + +    G+ +  TGKG  NL  S+ RPLEVF CS++ + GY +GFKWLS+Y+
Sbjct:    5 DWFKSALSFLGLYKKKATIVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHLLTGKGGSNL-RSDQRPLEVFPCSVINRFGYTDGFKWLSKYL 191          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.098e-26
Identity = 71/191 (37.17%), Postives = 96/191 (50.26%), Query Frame = -3
Query:  175 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW-XXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ 744
            MFL DWFY +   LG ++KEAKI+ +GL NAGKTTLLH+L    L  H PT  P +E  + G + FKA+DLGG Q  R +W                        ESK E+  +L DE L+  P LILG+K D     + + L   L +  F  G     L +SN  P ++ M S + + G  +   WL +
Sbjct:    1 MFLVDWFYNMFLWLGFFKKEAKIVIIGLGNAGKTTLLHLLVTGSLKSHIPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDEHLSQSPLLILGSKCDAKGHHNRENLIDLLDIRRFELG-----LNNSNNVPFDLIMTSSITRYGITDMLNWLDK 186          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.480e-16
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = -3
Query:  346 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDI 699
            L+ K + ILFLG+DNAGKTTL++ LK +    + PT HP++  + IG +K +  DLGGH  AR  W                   ERF E +   + +LS E  A  P ++L NKID+
Sbjct:   31 LFGKPSSILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSLEKRA--PVVVLMNKIDL 146          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15
Identity = 57/180 (31.67%), Postives = 84/180 (46.67%), Query Frame = -3
Query:  154 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS-IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK*SKK 690
            +E +IL LGLDNAGKTT+L  L  E +    PT+    + ++ +G I+   +D+GG +  R  W                  K+RF E   EL  LL +E L  VP LI  NK D+  AAS +E+              K+NL     R   +  CS ++  G  +G  W++  +K + K
Sbjct:   16 REIRILLLGLDNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTAASSEEI------------TRKLNLDLLRDRTWHIQACSALKNEGINDGITWVASNLKPASK 183          
The following BLAST results are available for this feature:
BLAST of CN186244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
SAR1A_MOUSE2.810e-5555.90GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1_PHANO1.068e-5460.54Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1_KLULA5.299e-5458.95Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1_ASHGO7.652e-5358.42Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]
SAR1_YEAST9.993e-5357.89Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_CANGA1.885e-5156.84Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
SAR1_GIALA4.971e-4447.87GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
SAR1B_DICDI2.098e-2637.17GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
SAR1_ENCCU7.480e-1638.98Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]
ARL3_CAEEL1.276e-1531.67ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186244 ID=CN186244; Name=CN186244; organism=Citrus sinensis; type=EST; length=749bp
TTTTTTTTAAGTCTTGTAACAGGATGGACGTTGCATGCCTTTTATTTCAT
AGGCGAAATGGGAGAATACAAGAATCTCCCCTTTTTAAAGGAAACGCATC
AACCTCAATTCATTGTGTAAACAACATATAAAGAAAGAACCGAACAAATT
CTACTTCTTGCTCTACTTGATGTACTGAGACAGCCACTTAAATCCCTCTC
CGTAACCCATTTTGCGGACAATGCTGCACATGAATACCTCAAGGGGACGA
ACGTTTGAATCAACCAGATTCACCTTACCCTTGCCAGTGGTGAAGTTGGT
CAGTCCAAGGTGATATCGCAACTCATCTTCTGATGCAGCATATGGGATAT
CAATTTTGTTGCCCAAAATTAGGAATGGAACATTGGCCAAGGATTCATCT
GAAAGCAGGGCATCAAGCTCCCTTTTTGACTCAGCAAACCTCTCCTTGTC
ATACGCATCTACCAGGTACACAACCGCATCAACCTTGGCGTAGTAATCTT
TCCAAACTCTACGAGCAATCTGATGCCCTCCCAAATCAAAAGCCTTAAAC
TTGATTTTCCCAATACTCAGTTCCTCCGAAGTGGGATGTTGTGTTGGTTG
ATGTTGAACTAATCTCTCATCTTTCAACATATGAAGCAGCGTCGTTTTAC
CGGCATTATCGAGGCCGAGAAACAAGATCTTGGCCTCTTTTTGCCAGAGC
CCAAGAGATGCAAGAATCCCATAAAACCAATCAAACAAAAACATGGGTT
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