CN186238

Overview
NameCN186238
Unique NameCN186238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 346
            MGR ++Q++RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F+   KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD--MDKVLLKYTEY 72
[Close]
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 346
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEY 72
[Close]
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 346
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEY 72
[Close]
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 346
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEY 72
[Close]
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 346
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEY 72
[Close]
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 346
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEY 72
[Close]
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 346
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEY 72
[Close]
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 346
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEY 72
[Close]
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 346
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEY 72
[Close]
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.757e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 346
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTD--MDKVLLKYTEY 72
The following BLAST results are available for this feature:
BLAST of CN186238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MEF2D_HUMAN5.939e-1655.41Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2A_XENLA5.939e-1655.41Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT5.939e-1655.41Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PONAB5.939e-1655.41Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_PIG5.939e-1655.41Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_MOUSE5.939e-1655.41Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_HUMAN5.939e-1655.41Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_CHICK5.939e-1655.41Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2A_BOVIN5.939e-1655.41Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
MEF2C_PONAB7.757e-1655.41Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186238 ID=CN186238; Name=CN186238; organism=Citrus sinensis; type=EST; length=764bp
GAGGCTACTCACTACCTGCTCTAATCTCTGTTCTATAAAAGTACAGAGAT
TAGAGAGATACCCAGAAGAAGCCTGCAAGTTTCTTTAGTGGAGAATTGCT
GGTGATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGCAGCT
GAAGAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAGCGAA
GGTCTGGTTTATTGAAAAAAGCCCATGAGATCTCTGTGCTTTGTGACGCT
GAAGTTGCTTTGATCGTCTTCTCCACTAAAGGCAAACTCTTTGAATACTC
TACTGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTATTGTT
ATGCGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGGAAACTGG
ACATTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTACAAAGAAA
TCAAAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTCAAAGAGC
TTCAAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCATTCGATCA
AGAAAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGAAAAAGGA
CAAGTTATTGAAAGAGCAAAACAACTTGCTTGCAAAGAAGGTAAAAGAAA
AGGAGAAGCTACTGAGCCAAGAGGCGCAGTGCAGGGAACAGCAGCAGCAG
CTAAATCATGACTGGAACTCATCCAATGTTCATCTAATGCAGACATTGAC
CAATAGCTCTTACC
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