CN186238

Overview
NameCN186238
Unique NameCN186238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186238_ssr689 microsatellite CN186238_ssr689:689..700. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:22..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.237e-30
Identity = 69/151 (45.70%), Postives = 108/151 (71.52%), Query Frame = 2
Query:  131 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFS++G+L+EYS +S ++  +ERY++   ++     +  E N   +  E +KL+ ++  +Q + +  MGE +  +S KEL+++E ++D  +  IRS+KN+L+   I
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS-VKGTIERYKK-AISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEI 166          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 69/153 (45.10%), Postives = 110/153 (71.90%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNG-NWTLEYSKLKARMEVLQR-NQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFS++G+L+EY+ +S ++  +ERY++   ++        E N  ++  E SKL+ ++  LQ  N +  +G+ +  +SL++L+ VE +++ G+  IR+RKN+L+   +
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VKSTVERYKK-ANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEV 151          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 70/150 (46.67%), Postives = 108/150 (72.00%), Query Frame = 2
Query:  134 RGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNG-NWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            RG++++KRIEN  NRQVTF KRRSGLLKKA+E+SVLCDAEVAL+VFS++G+L+EYS +S  E I ERY++   ++    +   E N  ++  E +KLK ++  LQ + +  +G+++  ++ +EL+ +E ++D GL  IR+RKN+L+   I
Sbjct:   45 RGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETI-ERYKK-ANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEI 192          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 9.439e-30
Identity = 68/151 (45.03%), Postives = 108/151 (71.52%), Query Frame = 2
Query:  131 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFS++G+L+EYS +S ++  +ERY++   ++     +  E N   +  E +KL+ ++  +Q + +  MGE +  +S KEL+++E +++  +  IRS+KN+L+   I
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS-VKGTIERYKK-AISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEI 166          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.103e-29
Identity = 63/152 (41.45%), Postives = 103/152 (67.76%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSC-MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            MGRG++++KRIEN  NRQVTFSKRR GLLKKA+E++VLCDA V +++FS+ GK+FEY + +C +  ++E Y+            EI  +    +E ++++  ME L    + F G+DL++L+L ++  +EQQ++  +  +R+RK+QL+ Q +
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQ----TVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQL 148          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.587e-29
Identity = 69/155 (44.52%), Postives = 105/155 (67.74%), Query Frame = 2
Query:  119 IVNMGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            ++ MGRG++++KRIENK +RQVTFSKRR+GLLKK HE+SVLCDA++ LI+FS+KGKLFEY S    M +I+ RY +   A   ++ N ++       E +K++     LQ + + + G+DL+    +EL  +E+Q++  L  IR+RK +LM Q +
Sbjct:    1 MIIMGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQLYD----EVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQM 151          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.684e-29
Identity = 67/151 (44.37%), Postives = 103/151 (68.21%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            M RG+ Q+KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEV+LI+FS KGKL+E+++ S M+  ++RY R+       +    E   +   E + +  ++E L+ +++  +GE +   S++ELQ +EQQ++  +K IR+RK Q+  + I
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFAS-SNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQI 150          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.684e-29
Identity = 62/151 (41.06%), Postives = 105/151 (69.54%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            MGRG++ +KRI+N +NRQVTFSKRR GL+KKA E+++LCDA+V LIVFS  G+L+++S+ S M+ I+ERY+     E     N +     W  E + L+ +++ L  N +  +GE++++ ++++LQ ++ Q++  L  IR++K+QL+ + I
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSS-MKSIIERYQE-AGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEI 149          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.990e-29
Identity = 65/151 (43.05%), Postives = 102/151 (67.55%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            MGRG++ ++RI+N  +RQVTFSKRR+GLLKKA E+S+LCDAEV L+VFS+ G+L+E+S+ + M+ +++RY      E  L  N       W  E + L+ ++  LQ + K  MGE+L+ L +++LQ +E +++  L+ IR RK+ L+   I
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTN-MKTVIDRYTN--AKEELLGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEI 148          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.044e-28
Identity = 68/150 (45.33%), Postives = 100/150 (66.67%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDS-CMERILERY--ERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 568
            MGRG++++KRIEN  +RQVTFSKRRSGL+KK HE+SVLCDA++ LIVFSTKGKL EY T    M++I++RY   +    E + +A     N     E +++K     LQ N + + G+DL+ +  +EL  +E+ +D  L  +R+RK +L+
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELL 150          
The following BLAST results are available for this feature:
BLAST of CN186238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AG_BRANA4.237e-3045.70Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
MADS3_ORYSJ7.227e-3045.10MADS-box transcription factor 3 OS=Oryza sativa su... [more]
MAD58_ORYSJ7.227e-3046.67MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AG_ARATH9.439e-3045.03Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
MAD29_ORYSJ2.103e-2941.45MADS-box transcription factor 29 OS=Oryza sativa s... [more]
FBP24_PETHY3.587e-2944.52MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
SOC1_ARATH4.684e-2944.37MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD25_ORYSJ4.684e-2941.06MADS-box transcription factor 25 OS=Oryza sativa s... [more]
MAD57_ORYSJ7.990e-2943.05MADS-box transcription factor 57 OS=Oryza sativa s... [more]
DEF21_ANTMA1.044e-2845.33MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186238 ID=CN186238; Name=CN186238; organism=Citrus sinensis; type=EST; length=764bp
GAGGCTACTCACTACCTGCTCTAATCTCTGTTCTATAAAAGTACAGAGAT
TAGAGAGATACCCAGAAGAAGCCTGCAAGTTTCTTTAGTGGAGAATTGCT
GGTGATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGCAGCT
GAAGAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAGCGAA
GGTCTGGTTTATTGAAAAAAGCCCATGAGATCTCTGTGCTTTGTGACGCT
GAAGTTGCTTTGATCGTCTTCTCCACTAAAGGCAAACTCTTTGAATACTC
TACTGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTATTGTT
ATGCGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGGAAACTGG
ACATTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTACAAAGAAA
TCAAAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTCAAAGAGC
TTCAAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCATTCGATCA
AGAAAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGAAAAAGGA
CAAGTTATTGAAAGAGCAAAACAACTTGCTTGCAAAGAAGGTAAAAGAAA
AGGAGAAGCTACTGAGCCAAGAGGCGCAGTGCAGGGAACAGCAGCAGCAG
CTAAATCATGACTGGAACTCATCCAATGTTCATCTAATGCAGACATTGAC
CAATAGCTCTTACC
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