CN186238

Overview
NameCN186238
Unique NameCN186238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186238_ssr689 microsatellite CN186238_ssr689:689..700. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:22..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.176e-26
Identity = 67/153 (43.79%), Postives = 103/153 (67.32%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTL--EYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            M RG+ ++KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVAL++FS + KL+E+S+ S +   +ERY+R     +++  N    + +     E S L  ++E L+ +++  +GE +   S++ELQ +E Q+D  L  IR++K QL+ + I
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSS-IAATIERYQRRI---KEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEI 149          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.712e-26
Identity = 63/152 (41.45%), Postives = 97/152 (63.82%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 583
            M R ++Q+K+I+N   RQVTFSKRR GL KKA E+SVLCDA+VALI+FS+ GKLF+YS+ S M++ILER + +     +L    +E        YS+L   +       +   GE+L  L+++ELQ +E+ +++GL  +  RK   +++ I+
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSS-MKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREIN 151          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.848e-26
Identity = 66/159 (41.51%), Postives = 104/159 (65.41%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYC-------YAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 583
            M RG+ Q+KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALIVFS +GKL+E+++ S  ++ +ERY  Y          ++ ++  + + +G        L  ++E L+  ++  +GE L + S++EL S+E +++  L  IR RK +L+ + ++
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASAS-TQKTIERYRTYTKENIGNKTVQQDIEQVKADADG--------LAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVA 150          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.842e-25
Identity = 60/153 (39.22%), Postives = 101/153 (66.01%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQ--ANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            MGRG++ +++I++  +RQVTFSKRR GL+KKA E+++LCDAEV LI+FS   KL+++++ S ++  +ER+      E++L   A+E++    W  E   L+  +  LQ N +   G +L  LS+KELQ++E Q++  L+ IR ++ Q++   I
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSS-VKSTIERFNTAKMEEQELMNPASEVK---FWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEI 149          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.360e-25
Identity = 61/149 (40.94%), Postives = 97/149 (65.10%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSC-MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLML 571
            MGRG++++KRIEN  NR VTFSKRR+GL+KKA EI+VLCDA+VALI+F++ GK+ +Y   S  +  +L++Y++    +     +E     N + E  ++K   + LQ   +H  GED+  L+LK L +VE  I+ GL  +R  + ++++
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHE-----NLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEILI 144          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.000e-25
Identity = 59/153 (38.56%), Postives = 102/153 (66.67%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEI-EPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLS-LKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            MG+G++++KRIE+   RQVTFSKRR+G LKKA+E++VLCDA+V ++VFS KGKLF++ +   +  ++E + RY    R  +  E    +    +E ++L+  ++ L+ + +   GEDL+ +S + EL  ++ Q++S L  + +RK++LM Q +
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVI--LMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQL 151          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.559e-24
Identity = 63/151 (41.72%), Postives = 94/151 (62.25%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSC------MERILERYERYCYAERQLQANEI---EPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSR 553
            MGRG++++KRIEN  NRQVTFSKRR+G+LKKA EI VLCDAEV +++FS+ GKL +Y T         + RILE+Y        Q  + +I   E + + + E  ++K   + +Q   +H  GEDL  L  KEL ++E+ +++G   +R +
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKY--------QTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK 143          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.660e-24
Identity = 57/149 (38.26%), Postives = 97/149 (65.10%), Query Frame = 2
Query:  134 RGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            R R+ ++RI+N   RQVTFSKRR GL KKA E+S+LCDAEV L+VFS  GKLF++++ S ME+I++RY  +    ++ + ++++  G  +   ++LK  +       +   GE+L  L++++LQ +E+ ++SGL  +   K++ +L  I
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTS-MEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEI 169          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.474e-24
Identity = 65/147 (44.22%), Postives = 95/147 (64.63%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSC-MERILERYERYCYAERQLQANEIEPNGNWTLEYSK---LKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRK 556
            MGRG++++KRIEN  NRQVT+SKRR+G++KKA E++VLCDA+VA+I+FS+ GK  E+ + S  ++ I +RY++       ++  E   N   TL + K      R E+ QR     MGEDL  L   EL+ +EQ +D+ LK +R RK
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYE---NMQRTLSHLKDINRNLRTEIRQR-----MGEDLDGLEFDELRGLEQNVDAALKEVRHRK 139          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.926e-24
Identity = 59/153 (38.56%), Postives = 100/153 (65.36%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANE-IEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLAD-LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            M RG+VQL+RIEN ++RQVTF KRR+GLLKKA E+S+LC+A++ +I+FS  GKL++ +T   ME ++ERY+     +     ++ ++P      E   LK  + +LQ+  ++  G    + ++++EL ++E+ ++  +  IRS K Q+M+Q I
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDPK----QEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEI 149          
The following BLAST results are available for this feature:
BLAST of CN186238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AGL19_ARATH2.176e-2643.79Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
JOIN_SOLLC3.712e-2641.45MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
MAD50_ORYSJ4.848e-2641.51MADS-box transcription factor 50 OS=Oryza sativa s... [more]
AGL17_ARATH1.842e-2539.22Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
PIST_ARATH5.360e-2540.94Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MAD30_ORYSJ7.000e-2538.56MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MADS4_ORYSJ1.559e-2441.72MADS-box transcription factor 4 OS=Oryza sativa su... [more]
MAD47_ORYSJ2.660e-2438.26MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD16_ORYSJ3.474e-2444.22MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MAD26_ORYSJ5.926e-2438.56MADS-box transcription factor 26 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186238 ID=CN186238; Name=CN186238; organism=Citrus sinensis; type=EST; length=764bp
GAGGCTACTCACTACCTGCTCTAATCTCTGTTCTATAAAAGTACAGAGAT
TAGAGAGATACCCAGAAGAAGCCTGCAAGTTTCTTTAGTGGAGAATTGCT
GGTGATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGCAGCT
GAAGAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAGCGAA
GGTCTGGTTTATTGAAAAAAGCCCATGAGATCTCTGTGCTTTGTGACGCT
GAAGTTGCTTTGATCGTCTTCTCCACTAAAGGCAAACTCTTTGAATACTC
TACTGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTATTGTT
ATGCGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGGAAACTGG
ACATTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTACAAAGAAA
TCAAAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTCAAAGAGC
TTCAAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCATTCGATCA
AGAAAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGAAAAAGGA
CAAGTTATTGAAAGAGCAAAACAACTTGCTTGCAAAGAAGGTAAAAGAAA
AGGAGAAGCTACTGAGCCAAGAGGCGCAGTGCAGGGAACAGCAGCAGCAG
CTAAATCATGACTGGAACTCATCCAATGTTCATCTAATGCAGACATTGAC
CAATAGCTCTTACC
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