CN186238

Overview
NameCN186238
Unique NameCN186238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186238_ssr689 microsatellite CN186238_ssr689:689..700. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:22..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.926e-24
Identity = 59/153 (38.56%), Postives = 100/153 (65.36%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANE-IEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLAD-LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            M RG+VQL+RIEN ++RQVTF KRR+GLLKKA E+S+LC+A++ +I+FS  GKL++ +T   ME ++ERY+     +     ++ ++P      E   LK  + +LQ+  ++  G    + ++++EL ++E+ ++  +  IRS K Q+M+Q I
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDPK----QEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEI 149          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.739e-24
Identity = 61/155 (39.35%), Postives = 98/155 (63.23%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQ----LQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            M RG+VQ++RIEN ++RQVTF KRR GLLKKA E+SVLCDA+V +I+FS++GKL E +T+  M  ++ERY+      +     LQ  ++   G +      L+  +++LQR  +   G    +++L +L ++E+ ++  +  IR+ K Q+M Q I
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGALQRQQVAEQGIFL-----LREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEI 150          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.011e-23
Identity = 59/148 (39.86%), Postives = 100/148 (67.57%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 568
            MGRG++++KRIEN  NRQVT+SKRR+G++KKA EI+VLCDA+V+LI+F   GK+ EY S  + +  +L+ Y++   + R+L   + E   N + E  ++K   + +Q   +H  GED+  L+ KEL  +E+ + +GL  I +++++++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQK--TSGRRLWDAKHE---NLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEIL 143          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.252e-23
Identity = 60/159 (37.74%), Postives = 99/159 (62.26%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEV-------LQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            M RG++Q+KRIEN+ NRQVT+SKRR+GL KKAHE+SVLCDA+V++I+ S+  KL EY S  +  +++ ++Y++    +             W+  Y K++  ++        L+R  +  MGE L DL  +++ ++ + +D+ LKLIR RK +++   I
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDL------------WSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQI 147          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.941e-23
Identity = 58/151 (38.41%), Postives = 90/151 (59.60%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 580
            MGRG++++K+IEN+  RQVTFSKRR+GL+KK  E+S+LCDA + LIVFS  GKL E+ ++    R+ +  +RY +       +  +       E   L+     L+   + F G DLA +   EL  +E+Q++  +  +R RKN+LM Q +
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSE--QNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQL 149          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.552e-23
Identity = 59/151 (39.07%), Postives = 97/151 (64.24%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKL-KARMEVLQRNQ------KHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRK 556
            M RG++Q+KRIEN+ NRQVT+SKRR+GL KKAHE++VLCDA V++I+FS+  KL EY S ++  + I++ Y+             I     W  +Y ++ + + ++L+ N+      K  +GE L +L ++EL+ +E ++++  KL+R RK
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQ------------TISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERK 139          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.557e-23
Identity = 57/152 (37.50%), Postives = 93/152 (61.18%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 583
            M R ++Q+++I+N   RQVTFSKRR GL KKA E+SVLCDA+VALI+FS+ GKLFE+ + S M+ +LER+        +L    +E       +++++   +       +   GE+L  L ++ELQ +E+ +++GL  +   K+  ++  IS
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSS-MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEIS 151          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.118e-22
Identity = 57/155 (36.77%), Postives = 98/155 (63.23%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDS-CMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHF-------MGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 568
            M RG++Q+KRIEN+ NRQVT+SKRR+GL KKA+E++VLCDA+V++I+ S+ GKL E+ + S   +++ + Y++    +             W   Y K++ ++  L+   ++        MGE L DL+ ++L+ + + +D+ LKLIR RK +++
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDL------------WNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVI 143          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.460e-22
Identity = 65/155 (41.94%), Postives = 96/155 (61.94%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSK---LKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 583
            M R R ++KRIE+   RQVTFSKRR GL KKA E+SVLCDA+VALIVFS+ GKL  +++ S M  I+++Y  +      L   E +P+ +  LE+SK   L  ++       +   GE+L  LS+ ELQ +E+ +++GL  +   K+Q  ++ IS
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSS-MNEIIDKYNTH---SNNLGKAE-QPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQIS 150          
BLAST of CN186238 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.906e-22
Identity = 55/148 (37.16%), Postives = 98/148 (66.22%), Query Frame = 2
Query:  128 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 568
            MGRG++++KRIEN  NRQVT+SKRR+G++KKA EISVLCDA V++I+F++ GK+ E+ S  + +  +L+ Y +   + ++L   + E   N   E +++K   + +Q   +H  GED+  L+ KEL  +E  +++G   +++++ + +
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHK--LSGKRLWDPKHEHLDN---EINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEFV 143          
The following BLAST results are available for this feature:
BLAST of CN186238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MAD26_ORYSI5.926e-2438.56MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD33_ORYSJ7.739e-2439.35MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MADS2_PETHY1.011e-2339.86Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
DEFA_ANTMA2.252e-2337.74Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
TT16_ARATH2.941e-2338.41Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
AP3_ARATH6.552e-2339.07Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
SVP_ARATH8.557e-2337.50MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MADS1_PETHY1.118e-2236.77Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
MAD22_ORYSJ1.460e-2241.94MADS-box transcription factor 22 OS=Oryza sativa s... [more]
GLOB_ANTMA1.906e-2237.16Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186238 ID=CN186238; Name=CN186238; organism=Citrus sinensis; type=EST; length=764bp
GAGGCTACTCACTACCTGCTCTAATCTCTGTTCTATAAAAGTACAGAGAT
TAGAGAGATACCCAGAAGAAGCCTGCAAGTTTCTTTAGTGGAGAATTGCT
GGTGATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGCAGCT
GAAGAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAGCGAA
GGTCTGGTTTATTGAAAAAAGCCCATGAGATCTCTGTGCTTTGTGACGCT
GAAGTTGCTTTGATCGTCTTCTCCACTAAAGGCAAACTCTTTGAATACTC
TACTGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTATTGTT
ATGCGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGGAAACTGG
ACATTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTACAAAGAAA
TCAAAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTCAAAGAGC
TTCAAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCATTCGATCA
AGAAAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGAAAAAGGA
CAAGTTATTGAAAGAGCAAAACAACTTGCTTGCAAAGAAGGTAAAAGAAA
AGGAGAAGCTACTGAGCCAAGAGGCGCAGTGCAGGGAACAGCAGCAGCAG
CTAAATCATGACTGGAACTCATCCAATGTTCATCTAATGCAGACATTGAC
CAATAGCTCTTACC
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