CN186237

Overview
NameCN186237
Unique NameCN186237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186237_ssr490 microsatellite CN186237_ssr490:490..501. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:417..1211. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = -3
Query:  608 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 793
            W  EY KLKA++E +Q+  KH MGEDL  L+LKELQ +EQQ++S LK I SRK+ LML+SIS
Sbjct:   91 WCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESIS 152          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = -3
Query:  611 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 793
            W  E SKLKA+ E LQR Q+H +GEDL  LS+KELQ +E+Q++  L   R RK QLM++ +
Sbjct:   89 WYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQV 149          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = -3
Query:  611 EYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 784
            EY KLKAR E LQR+Q++ +GEDL  L+ KEL+S+E+Q+D  LK IRS + QLML  +
Sbjct:   95 EYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQL 152          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = -3
Query:  611 EYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 784
            EY KLKAR E LQR+Q++ MGEDL  LS K+L+++E+Q+DS LK IRS + Q ML  +
Sbjct:   97 EYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQL 154          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = -3
Query:  611 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 793
            W  E S+LK ++E LQR+Q+H +GEDL  LS+KELQ +E+Q++  L   R RK Q+M++ +
Sbjct:   91 WYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQV 151          
The following BLAST results are available for this feature:
BLAST of CN186237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
MAD15_ORYSJ1.005e-1361.29MADS-box transcription factor 15 OS=Oryza sativa s... [more]
MADS6_ORYSJ1.604e-1152.46MADS-box transcription factor 6 OS=Oryza sativa su... [more]
AGL9_PETHY6.097e-1156.90Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA7.963e-1156.90MADS-box transcription factor 1 OS=Pisum sativum G... [more]
MAD17_ORYSJ7.963e-1147.54MADS-box transcription factor 17 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186237 ID=CN186237; Name=CN186237; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTTAAGAATTAGCATGTATTGAATTTCTAATCATTCCTCTTA
TCATCCAATACTACAAATCTTCGGTGATTCAGTCCATTATAACATAGAAG
ATTACATGCAAGCTGAAAGTGGATATTGAAATGGTGTACATACCCTTATA
CAAAGTATCAATAGTACATATAACAAACCTTTTTACAGCTCTGGGCATAT
AATATAACCATGTTAAGATGAGTGCTCGTCCATATACATATATCAATTTC
TTGTTCTGATTAATTTCATTAAGCAAAATATGAATCGCACATACTGATAG
TAATCAAGAACTCATGATCTGTAAATTATTAATGAAGGTGACGAAGCATC
CAAGCGGGCAGCAGAGCGTTAGCTCGATGTCCTGTCGGAGTATCCTCGTC
CTCCTCTCCGCTGCCCCCTCCCATTTGGTAAGAGCTATTGGTCAATGTCT
GCATTAGATGAACATTGGATGAGTTCCAGTCATGATTTAGCTGCTGCTGC
TGTTCCCTGCACTGCGCCTCTTGGCTCAGTAGCTTCTCCTTTTCTTTTAC
CTTCTTTGCAAGCAAGTTGTTTTGCTCTTTCAATAACTTGTCCTTTTTCT
GAAGCTCTGAAATGGATTGAAGCATGAGTTGGTTCTTTCTTGATCGAATG
AGTTTAAGACCAGAATCAATCTGCTGCTCTACACTTTGAAGCTCTTTGAG
ACTTAAGTCTGCAAGATCCTCTCCCATGAAATGCTTTTGATTTCTTTGTA
AAACCTCCATCCTAGCTTTAAGCTTGGAATATTCCAATGTCCAGT
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