CN186220

Overview
NameCN186220
Unique NameCN186220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_XENLA (Transcription elongation factor SPT4 OS=Xenopus laevis GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.727e-13
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 262
            VKT DQF   GC  C  + +M  + E V DCT+ +F+GI+++M P  SW ++W RI  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIVAMMSPDDSWVSKWQRITNFKPGVYAVSVTGRLPQGIVRELKSRGVVY 108          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_DROME (Transcription elongation factor SPT4 OS=Drosophila melanogaster GN=spt4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.727e-13
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPE 223
            VK++DQF   GC  C  F +M  + + V D T+ NF+GII++  PT SW A+W R+ RF  G Y ++VS  LP+
Sbjct:   22 VKSFDQFETDGCENCEEFLRMKNNKDNVYDHTSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQ 95          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT42_MOUSE (Transcription elongation factor SPT4 2 OS=Mus musculus GN=Supt4h2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.248e-12
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 262
            VKT DQF   GC  C  + +M  + E V DCT+ +F+GI ++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGINAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4_ASPFU (Transcription elongation factor spt4 OS=Aspergillus fumigatus GN=spt4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11
Identity = 30/89 (33.71%), Postives = 53/89 (59.55%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 268
            V+ + +F   GC  C     +  +++ + +CT+  F G+I++ DP+ SW ARW R+  +V G Y + V+ +LP+D+    ED  V+Y+P
Sbjct:   24 VQLHSKFMRDGCPNCDNVLGLRGNNDAIQECTSQVFEGLITLRDPSTSWVARWQRLEGYVAGTYAVKVTGSLPDDVITNLEDSGVRYIP 112          
BLAST of CN186220 vs. ExPASy Swiss-Prot
Match: SPT4H_CAEEL (Transcription elongation factor SPT4 OS=Caenorhabditis elegans GN=spt-4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11
Identity = 31/92 (33.70%), Postives = 53/92 (57.61%), Query Frame = 2
Query:    5 VKTYDQFRESGCHICP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 277
            VK+ + F++ GC  C     +  D E+V DCT+ N++G+I+ M    SW  +W ++ R V G Y ++VS  LP ++ +  +   V+Y P +R
Sbjct:   21 VKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAMSNNESWVCKWQKMQRKVKGMYAISVSGVLPNNIVSELKSLGVRYKPNQR 112          
The following BLAST results are available for this feature:
BLAST of CN186220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SPT4H_XENLA7.727e-1339.08Transcription elongation factor SPT4 OS=Xenopus la... [more]
SPT4H_DROME7.727e-1344.59Transcription elongation factor SPT4 OS=Drosophila... [more]
SPT42_MOUSE2.248e-1237.93Transcription elongation factor SPT4 2 OS=Mus musc... [more]
SPT4_ASPFU3.246e-1133.71Transcription elongation factor spt4 OS=Aspergillu... [more]
SPT4H_CAEEL3.246e-1133.70Transcription elongation factor SPT4 OS=Caenorhabd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186220 ID=CN186220; Name=CN186220; organism=Citrus sinensis; type=EST; length=503bp
GCGGGTCAAAACCTATGATCAGTTTAGAGAATCGGGATGCCACATCTGTC
CCTTCTTCAAGATGGATGAAGACCACGAGCGTGTTGTTGATTGTACTACC
CCTAATTTTAATGGCATTATATCAGTCATGGATCCAACTAGAAGCTGGGC
TGCTCGCTGGTTGCGAATTGGAAGATTTGTCCCTGGTTGTTATACTCTTG
CTGTCTCAGAAGCCCTACCTGAGGACTTGCAGAACTTATGCGAAGACGAG
CGCGTGCAATATGTGCCGCCAAAACGTTAATGACAGTTTGAGCAGTGCAT
TGTCTGTAAAGATTATATCTGTTTCGGGTTACTTCGGAGATGACATGTTT
AACGATTATATGCAACTGTAGCTGCTAATGTTGACTTGAATTTCTTGTGC
CCAATGCTTGTGTAGTAATCCTATTTATGTTTGTAACTTGTATGCTGCGT
TTTGATTTTTTAATGGAGTTCTAGAAACTTTTGAGTTAAAAAAAAAAAAA
AAA
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