CN186219

Overview
NameCN186219
Unique NameCN186219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9644 contig Csv1_Contig9644:306..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_DANRE (Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.402e-14
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = -1
Query:  285 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALP 500
            VKT DQF   GC+NC  + +M  + E V +CT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Sbjct:   22 VKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMMSPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_XENLA (Transcription elongation factor SPT4 OS=Xenopus laevis GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.137e-14
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  243 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 500
            VKT DQF   GC+NC  + +M  + E V DCT+ +F+GI+++M P  SW ++W RI  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIVAMMSPDDSWVSKWQRITNFKPGVYAVSVTGRLPQGIVRELKSRGVVY 108          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT42_MOUSE (Transcription elongation factor SPT4 2 OS=Mus musculus GN=Supt4h2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.127e-14
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = -1
Query:  243 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 500
            VKT DQF   GC+NC  + +M  + E V DCT+ +F+GI ++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGINAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_CAEEL (Transcription elongation factor SPT4 OS=Caenorhabditis elegans GN=spt-4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.727e-13
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = -1
Query:  228 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 500
            VK+ + F++ GCENC     +  D E+V DCT+ N++G+I+ M    SW  +W ++ R V G Y ++VS  LP ++ +  +   V+Y P +R
Sbjct:   21 VKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAMSNNESWVCKWQKMQRKVKGMYAISVSGVLPNNIVSELKSLGVRYKPNQR 112          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4_ASPFU (Transcription elongation factor spt4 OS=Aspergillus fumigatus GN=spt4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.248e-12
Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = -1
Query:  237 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 500
            V+ + +F   GC NC     +  +++ + +CT+  F G+I++ DP+ SW ARW R+  +V G Y + V+ +LP+D+    ED  V+Y+P
Sbjct:   24 VQLHSKFMRDGCPNCDNVLGLRGNNDAIQECTSQVFEGLITLRDPSTSWVARWQRLEGYVAGTYAVKVTGSLPDDVITNLEDSGVRYIP 112          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_CAEBR (Transcription elongation factor SPT4 OS=Caenorhabditis briggsae GN=spt-4 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.457e-11
Identity = 32/92 (34.78%), Postives = 54/92 (58.70%), Query Frame = -1
Query:  228 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 500
            +K+ D F+  GCENC     +  D E+V DCT+ N++G+I+ M    SW  +W ++ R V G Y ++VS +LP ++ +  +   V+Y   +R
Sbjct:   21 IKSVDAFQTDGCENCDEVLHLKGDEEKVYDCTSANYDGMIAAMSNDDSWVCKWQKMQRRVKGIYAISVSGSLPSNVVSDLKSMGVRYKANQR 112          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4_ASHGO (Transcription elongation factor SPT4 OS=Ashbya gossypii GN=SPT4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.903e-11
Identity = 27/78 (34.62%), Postives = 48/78 (61.54%), Query Frame = -1
Query:  267 VKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 500
            V+T ++F   GC NC     +E     ++CT+P+F G++ +  PT+SW A+W+ + ++VPG Y + V   LP ++ +L
Sbjct:   13 VQTTNEFTRDGCPNCQGI-FEEASVSAIECTSPSFEGLVGMCKPTKSWVAKWISVEQYVPGMYAIKVDGRLPVEVVDL 89          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4_KLULA (Transcription elongation factor SPT4 OS=Kluyveromyces lactis GN=SPT4 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 27/78 (34.62%), Postives = 46/78 (58.97%), Query Frame = -1
Query:  267 VKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 500
            V++  +F  +GC NC     +E     V+CT+P+F G++ +  P+RSW ARW+ I  ++PG Y + +   LP ++  L
Sbjct:   13 VQSTAEFNRNGCPNCQSI-FEEAGVSAVECTSPSFEGLVGMCKPSRSWVARWMSIDSYIPGMYAVKIDGRLPIEVTEL 89          
The following BLAST results are available for this feature:
BLAST of CN186219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SPT4H_DANRE2.402e-1446.58Transcription elongation factor SPT4 OS=Danio reri... [more]
SPT4H_XENLA3.137e-1440.23Transcription elongation factor SPT4 OS=Xenopus la... [more]
SPT42_MOUSE9.127e-1439.08Transcription elongation factor SPT4 2 OS=Mus musc... [more]
SPT4H_CAEEL7.727e-1335.87Transcription elongation factor SPT4 OS=Caenorhabd... [more]
SPT4_ASPFU2.248e-1234.83Transcription elongation factor spt4 OS=Aspergillu... [more]
SPT4H_CAEBR1.457e-1134.78Transcription elongation factor SPT4 OS=Caenorhabd... [more]
SPT4_ASHGO1.903e-1134.62Transcription elongation factor SPT4 OS=Ashbya gos... [more]
SPT4_KLULA9.445e-1134.62Transcription elongation factor SPT4 OS=Kluyveromy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186219 ID=CN186219; Name=CN186219; organism=Citrus sinensis; type=EST; length=503bp
TTTTTTTTTTTTTTTTTAACTCAAAAGTTTCTAGAACTCCCTCAAAAAAT
CAAAACGCAGCATACAAGTTACAAACATAAATAGGATTACTACACAAGCA
TTGGGCACAAGAAATTCAAGTCAACATTAGCAGCTACAGTTGCATATAAT
CGTTAAACATGTCATCTCCGAAGTAACCCGAAACAGATATAATCTTTACA
GACAATGCACTGCTCAAACTGTCATTAACGTTTTGGCGGCACATATTGCA
CGCGCTCGTCTTCGCATAAGTTCTGCAAGTCCTCAGGTAGGGCTTCTGAG
ACAGCAAGAGTATAACAACCAGGGACAAATCTTCCAATTCGCAACCAGCG
AGCAGCCCAGCTTCTAGTTGGATCCATGACTGATATAATGCCATTAAAAT
TAGGGGTAGTACAATCAACAACACGCTCGTGGTCTTCATCCATCTTGAAG
AAGGGACAGTTCTCGCATCCCGATTCTCTAAACTGATCATAGGTTTTGAC
CCT
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