CN186212

Overview
NameCN186212
Unique NameCN186212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN2_SOLLC (Mannan endo-1,4-beta-mannosidase 2 OS=Solanum lycopersicum GN=MAN2 PE=2 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.242e-61
Identity = 104/209 (49.76%), Postives = 147/209 (70.33%), Query Frame = 2
Query:  149 FIFLALLVIIYLNTYIYMAKANPN-QEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            F+   L +       + + + N N Q F + NG+HF +NG P   NGFN+YW+++ A +PS + KV+   ++A+  G+++ RTWAFSDGG RALQ+SPG Y+E  F+ LDFV++EA++YG+ +ILS VNN+ ++GG+ +YV+WAR  G  +  +DDFYTN + K YYKNH+K V+TR N+ITG+ YKDD TI AWELMNE R   D SG
Sbjct:   12 FVLFLLSLAFACEARVLLDENNANDQGFVRVNGAHFELNGSPFLFNGFNSYWLMHVAAEPSERYKVSEVLREASSAGLSVCRTWAFSDGGDRALQISPGVYDERVFQGLDFVISEAKKYGIRLILSFVNNYNDFGGKAQYVQWARNAGAQINGDDDFYTNYITKNYYKNHIKKVVTRFNTITGMTYKDDSTIMAWELMNEPRNQADYSG 220          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN1_SOLLC (Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lycopersicum GN=MAN1 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.864e-58
Identity = 100/185 (54.05%), Postives = 136/185 (73.51%), Query Frame = 2
Query:  218 NQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            N  F     SHF +NG P   NGFN+YW+++ A DP+ + KVT   + A+  G+++ RTWAFSDGG RALQ+SPG Y+E  F+ LDFV+AEA++YG+ +ILS VN + ++GG+ +YV WAR  G  + N+D+FYT+ ++K+Y KNH++ V+TR+NSIT VAYKDDPTI AWELMNE R   D SG
Sbjct:   24 NSGFIGVKDSHFELNGSPFLFNGFNSYWLMHVAADPTERYKVTEVLKDASVAGLSVCRTWAFSDGGDRALQISPGIYDERVFQGLDFVIAEAKKYGIRLILSFVNQWNDFGGKAQYVWWARNAGAQISNDDEFYTHPMLKKYLKNHIEKVVTRLNSITKVAYKDDPTIMAWELMNEPRDQADYSG 208          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN8_ORYSJ (Mannan endo-1,4-beta-mannosidase 8 OS=Oryza sativa subsp. japonica GN=MAN8 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.088e-57
Identity = 96/180 (53.33%), Postives = 137/180 (76.11%), Query Frame = 2
Query:  233 QTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            + +G+    +G+P  ++GFN YW++ +A D +T+ +VTAA  +A + G+N+ RTWAFSDGGYRALQ  P  Y+ED F+ALDFVV+EA+ + + +ILSL NN+++YGG+ +YV W +E G  L +EDDF+++  +K YYK  V+AV+TRIN++T   YKDDPTI AWEL+NE RCP+DPSG
Sbjct:    3 ECSGTQLWASGRPFIIHGFNTYWLMSFAADQATRPRVTAAIAEAAEAGLNVCRTWAFSDGGYRALQTVPFHYDEDVFQALDFVVSEAKRHNMRLILSLCNNWEDYGGKAQYVRWGKEAGLDLTSEDDFFSDPTIKSYYKAFVEAVVTRINTVTNETYKDDPTILAWELINEPRCPSDPSG 182          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN1_ARATH (Mannan endo-1,4-beta-mannosidase 1 OS=Arabidopsis thaliana GN=MAN1 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.088e-57
Identity = 106/178 (59.55%), Postives = 133/178 (74.72%), Query Frame = 2
Query:  227 FAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTK--AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARC 754
            F   NG+ F +NG+ +YLNGFNAYWM+  A D ++K  A VT A +QA+  GMN+AR W F++G Y  LQ+SPGSY+ED FK LDFVV EA  + + +I+SLVNNF++YGGR +YVEWA      L   D+FYTN+ VKQ+YKNHVK VLTR N+ITG  YKDDPTIF+WEL+NE RC
Sbjct:   29 FVGRNGTQFVLNGEQVYLNGFNAYWMMTTAADTASKGRATVTTALRQASAVGMNVARIWGFNEGDYIPLQISPGSYSEDVFKGLDFVVYEAGRFNIKLIISLVNNFEDYGGRKKYVEWA-----GLDEPDEFYTNSAVKQFYKNHVKTVLTRKNTITGRMYKDDPTIFSWELINEPRC 201          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN5_ORYSJ (Putative mannan endo-1,4-beta-mannosidase 5 OS=Oryza sativa subsp. japonica GN=MAN5 PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 9.213e-57
Identity = 100/181 (55.25%), Postives = 136/181 (75.14%), Query Frame = 2
Query:  233 QTNGSHFAVNG-KPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            +T G+ F V G +P Y+NGFN YW++  A DPST+ KVT  F+QA   G+ + RTWAF+DGG+RALQ SPG Y+E+ FKALDFVV+EAR++ + +IL L+NN+ +YGG+ +YV WA+         D F+++  V+ Y+K+HV AVLTR+N+ TGVAY+DDPTI AWELMNE RC +DP+G
Sbjct:   79 RTRGAQFVVGGGRPFYVNGFNTYWLMVLAVDPSTRGKVTEVFRQAAAVGLTVCRTWAFNDGGWRALQKSPGVYDEEVFKALDFVVSEARKHKIRLILPLINNWDDYGGKAQYVRWAQAAAAG-AGADAFFSDETVRGYFKSHVTAVLTRVNAYTGVAYRDDPTIMAWELMNEPRCASDPTG 258          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN3_SOLLC (Mannan endo-1,4-beta-mannosidase 3 OS=Solanum lycopersicum GN=MAN3 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.681e-56
Identity = 100/185 (54.05%), Postives = 134/185 (72.43%), Query Frame = 2
Query:  218 NQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            N  F     SHF +NG P   NGFN+YW+++ A DP+ + KVT   + A+  G+++ RTWAFSDGG RALQ+SPG Y+E  F+ LDFV+AEA++YGV +ILS VN + ++GG+  YV WAR  G  + N+D+FYT+ ++K+Y KNH++ V+TR+NSIT VAYKDD TI AWELMNE R   D SG
Sbjct:   25 NSGFIGVKDSHFELNGSPFLFNGFNSYWLMHVAADPAERYKVTEVLKDASTAGLSVCRTWAFSDGGDRALQISPGVYDERVFQGLDFVIAEAKKYGVRLILSFVNQWNDFGGKAEYVWWARNAGVQISNDDEFYTHPILKKYLKNHIE-VVTRLNSITKVAYKDDATIMAWELMNEPRDQADYSG 208          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN7_ORYSJ (Mannan endo-1,4-beta-mannosidase 7 OS=Oryza sativa subsp. japonica GN=MAN7 PE=2 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 5.972e-56
Identity = 96/180 (53.33%), Postives = 135/180 (75.00%), Query Frame = 2
Query:  233 QTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            +  G+    +G+P  ++GFN YW++ +A D +T+ +VTAA  +A   G+N+  TWAFSDGGYRALQ +P  Y+ED F+ALDFVV+EAR + + +ILSL NN+++YGG+ +YV W +E G  L +EDDF+++  +K YYK  V+AV+TRIN++T   YKDDPTI AWEL+NE RCP+DPSG
Sbjct:   13 ERRGTQLWASGRPFIIHGFNTYWLMSFAADQATRLRVTAAIAEA---GLNVCCTWAFSDGGYRALQTAPFHYDEDVFRALDFVVSEARRHNMRLILSLCNNWEDYGGKAQYVRWGKEAGLDLTSEDDFFSDPTIKSYYKAFVEAVVTRINTVTNETYKDDPTILAWELINEPRCPSDPSG 189          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MANP_ARATH (Putative mannan endo-1,4-beta-mannosidase P OS=Arabidopsis thaliana GN=MANP PE=5 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 4.280e-54
Identity = 98/206 (47.57%), Postives = 136/206 (66.02%), Query Frame = 2
Query:  155 FLALLVIIYLNTYIYMAKANPNQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            F+ LL I+   +Y+ + +A P+  F   NG  F +NGKP Y NGFNAYW+ Y A DP+T+ K+T  F+    Y               RALQ +PGSY+E TF+ LDF +AEA+  G+ +I+ LVNN+ +YGG+ +YV+WAR +G+ + + DDFY N V+K++YKNHVK +L R+N+ T VAYKD+P   AW+LMNE RC  D SG
Sbjct:    6 FIVLLAIVIAQSYVGV-EAAPSDGFVSRNGVQFILNGKPFYANGFNAYWLAYEATDPATRFKITNGFRNGAIY---------------RALQTAPGSYDEQTFQGLDFGIAEAKRVGIKLIIPLVNNWDDYGGKKQYVDWARSKGEMVSSNDDFYRNPVIKEFYKNHVKTMLNRVNTFTKVAYKDEPASMAWQLMNEPRCGVDRSG 195          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN2_ARATH (Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis thaliana GN=MAN2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.732e-53
Identity = 96/209 (45.93%), Postives = 145/209 (69.38%), Query Frame = 2
Query:  155 FLALLVIIYLN--TYIYMAKANPNQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDD-FYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            FL  +  IYL+     +  K      F + NG+ F V+GK LY+NG+N+YW + +A +  ++ +V+A  +   K G+ + RTWAF+DGGY ALQ+SPG ++E  FKALD V+AEA+ +GV ++LSLVNN + YGG+ +YV WA + G  L + +D F+ +  +++Y+KN++  +LTR NS+TG+ Y++DPTIFAWEL+NE RC +D SG
Sbjct:   16 FLTCVAFIYLSFGDLWFGLKTEGELAFVKRNGTQFVVDGKALYVNGWNSYWFMDHAVNDHSRHRVSAMLEAGAKMGLTVCRTWAFNDGGYNALQISPGRFDERVFKALDHVIAEAKTHGVRLLLSLVNNLQAYGGKTQYVNWAWQEGVGLSSSNDSFFFDPSIRRYFKNYLTVLLTRKNSLTGIEYRNDPTIFAWELINEPRCMSDVSG 224          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN5_ARATH (Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis thaliana GN=MAN5 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.180e-53
Identity = 96/214 (44.86%), Postives = 146/214 (68.22%), Query Frame = 2
Query:  134 RLFNSFIFLALLVIIYLNTYIYMAKANPNQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDD-FYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            R+   FI  A + + + + ++   K      F + NG+ F V+ KPLY+NG+N+YW + +A D  ++  V    +   K G+ + RTWAF+DGGY ALQ+SPG ++E  F+ALD V+AEAR++ V ++LSLVNN + YGG+ +YV+WA + G  L + +D F+ +  ++ Y+KN++K +LTR NS+TG+ Y++DPTIFAWEL+NE RC TD SG
Sbjct:   11 RILGFFICAAFIYLSFRDLWLNH-KGKAKLGFVKRNGTQFVVDDKPLYVNGWNSYWFMDHAVDEHSRNLVGEMLEAGAKMGLTVCRTWAFNDGGYNALQISPGRFDERVFQALDHVIAEARKHDVRLLLSLVNNLQAYGGKTQYVKWAWQEGVGLSSSNDSFFFDPSIRNYFKNYLKVLLTRKNSVTGIEYRNDPTIFAWELINEPRCTTDVSG 223          
The following BLAST results are available for this feature:
BLAST of CN186212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MAN2_SOLLC1.242e-6149.76Mannan endo-1,4-beta-mannosidase 2 OS=Solanum lyco... [more]
MAN1_SOLLC2.864e-5854.05Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lyco... [more]
MAN8_ORYSJ1.088e-5753.33Mannan endo-1,4-beta-mannosidase 8 OS=Oryza sativa... [more]
MAN1_ARATH1.088e-5759.55Mannan endo-1,4-beta-mannosidase 1 OS=Arabidopsis ... [more]
MAN5_ORYSJ9.213e-5755.25Putative mannan endo-1,4-beta-mannosidase 5 OS=Ory... [more]
MAN3_SOLLC2.681e-5654.05Mannan endo-1,4-beta-mannosidase 3 OS=Solanum lyco... [more]
MAN7_ORYSJ5.972e-5653.33Mannan endo-1,4-beta-mannosidase 7 OS=Oryza sativa... [more]
MANP_ARATH4.280e-5447.57Putative mannan endo-1,4-beta-mannosidase P OS=Ara... [more]
MAN2_ARATH4.732e-5345.93Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis ... [more]
MAN5_ARATH6.180e-5344.86Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002I16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186212 ID=CN186212; Name=CN186212; organism=Citrus sinensis; type=EST; length=775bp
GCGGTCTCTCTCTCTCTCTCTCTCACATGAAGAACCACCATTCAACTTTA
TAACGTCATGTGTGTATAATTATTGCTGAAACTTTCTCGGCTATAATTAA
GTTTATGCTAGCTAGCCAGCCATGTTAGTCACAAGATTGTTCAACAGTTT
CATCTTTTTGGCTCTACTAGTAATCATATATCTGAATACTTACATCTACA
TGGCTAAAGCCAACCCTAATCAAGAATTTGCACAAACAAATGGGAGCCAT
TTTGCTGTAAATGGGAAGCCTCTCTACTTAAATGGTTTCAATGCGTACTG
GATGTTGTATTATGCAGGTGACCCATCAACGAAGGCGAAGGTGACAGCCG
CATTTCAACAAGCCACCAAATATGGCATGAATATCGCTAGAACTTGGGCT
TTTAGCGACGGCGGTTACAGAGCCCTTCAGGTTTCTCCTGGTTCATACAA
CGAGGACACGTTCAAGGCACTGGACTTTGTGGTGGCAGAAGCAAGGGAAT
ACGGGGTTTATGTGATCCTAAGCTTAGTGAATAACTTCAAGGAGTATGGG
GGAAGGCCACGTTATGTTGAATGGGCGAGAGAGCGTGGCCAGTCTTTGAA
GAATGAGGATGACTTCTATACAAATGCTGTTGTCAAACAATACTACAAGA
ATCATGTTAAGGCAGTGCTGACGAGAATCAACTCGATAACCGGCGTGGCA
TACAAGGATGATCCCACCATTTTTGCATGGGAACTCATGAACGAAGCTCG
CTGCCCAACCGATCCCTCTGGGACA
back to top