CN186212

Overview
NameCN186212
Unique NameCN186212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN2_ORYSJ (Mannan endo-1,4-beta-mannosidase 2 OS=Oryza sativa subsp. japonica GN=MAN2 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 5.784e-51
Identity = 90/183 (49.18%), Postives = 129/183 (70.49%), Query Frame = 2
Query:  227 FAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSL-KNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            F +  G    ++G+P Y+NG+N+YW++  A +P+T+ +V++ F+ A   G+ + RTWAF+DG Y ALQ+SPG ++E  FKALD VVAEA E+GV +ILSL NN   YGG+ +YV WA E G  L  + D F+ +  ++ Y+K ++K +L R N +TG+ Y+DDPTI AWELMNE RC +DPSG
Sbjct:   54 FVERRGKRLFLDGRPFYINGWNSYWLMDLAVEPNTRPRVSSMFRTAVSMGLTVCRTWAFNDGSYNALQLSPGHFDERVFKALDRVVAEASEHGVRLILSLANNLDAYGGKRQYVRWAWEEGVGLTASNDSFFFDPAIRDYFKVYLKTLLMRKNHLTGLEYRDDPTILAWELMNEPRCTSDPSG 236          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN6_ORYSJ (Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa subsp. japonica GN=MAN6 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 4.289e-46
Identity = 96/232 (41.38%), Postives = 143/232 (61.64%), Query Frame = 2
Query:  134 RLFNSFIFLALLVIIYLNTY----------------IYMAKANPNQEFAQTNGSHF--AVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNE-DDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            RL++    L LL ++YL  +                + +    P   FA   G+HF  A  G PLY+NG+N+YW+L  A  P+  A++    ++  + G+++ RTWAFSDGG  ALQ+SPG ++E  F+ LD+V+ EAR   + +IL LVNN    GG+ +YV+WA+  G ++ N  D FY++  +K+YYK++VKA+LTR NS + + Y D+P IFAWELMNE RC ++ SG
Sbjct:    6 RLYSLLGLLLLLAVVYLTWFPTTHDGGGGGGGGWVKLPVPWLQPRMPFAARRGTHFVDADTGSPLYVNGWNSYWLLP-ARSPALAAEM---LRRGRRMGLSVCRTWAFSDGGPGALQISPGRFSEAVFQVLDYVIYEARRNHIRLILCLVNNLDNLGGKAQYVQWAQAAGANMTNSTDSFYSHPTIKRYYKDYVKAILTRRNSYSRIRYSDEPAIFAWELMNEPRCVSNSSG 233          
The following BLAST results are available for this feature:
BLAST of CN186212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MAN2_ORYSJ5.784e-5149.18Mannan endo-1,4-beta-mannosidase 2 OS=Oryza sativa... [more]
MAN6_ORYSJ4.289e-4641.38Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186212 ID=CN186212; Name=CN186212; organism=Citrus sinensis; type=EST; length=775bp
GCGGTCTCTCTCTCTCTCTCTCTCACATGAAGAACCACCATTCAACTTTA
TAACGTCATGTGTGTATAATTATTGCTGAAACTTTCTCGGCTATAATTAA
GTTTATGCTAGCTAGCCAGCCATGTTAGTCACAAGATTGTTCAACAGTTT
CATCTTTTTGGCTCTACTAGTAATCATATATCTGAATACTTACATCTACA
TGGCTAAAGCCAACCCTAATCAAGAATTTGCACAAACAAATGGGAGCCAT
TTTGCTGTAAATGGGAAGCCTCTCTACTTAAATGGTTTCAATGCGTACTG
GATGTTGTATTATGCAGGTGACCCATCAACGAAGGCGAAGGTGACAGCCG
CATTTCAACAAGCCACCAAATATGGCATGAATATCGCTAGAACTTGGGCT
TTTAGCGACGGCGGTTACAGAGCCCTTCAGGTTTCTCCTGGTTCATACAA
CGAGGACACGTTCAAGGCACTGGACTTTGTGGTGGCAGAAGCAAGGGAAT
ACGGGGTTTATGTGATCCTAAGCTTAGTGAATAACTTCAAGGAGTATGGG
GGAAGGCCACGTTATGTTGAATGGGCGAGAGAGCGTGGCCAGTCTTTGAA
GAATGAGGATGACTTCTATACAAATGCTGTTGTCAAACAATACTACAAGA
ATCATGTTAAGGCAGTGCTGACGAGAATCAACTCGATAACCGGCGTGGCA
TACAAGGATGATCCCACCATTTTTGCATGGGAACTCATGAACGAAGCTCG
CTGCCCAACCGATCCCTCTGGGACA
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