CN186207

Overview
NameCN186207
Unique NameCN186207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_ALISL (GTP cyclohydrolase-2 OS=Aliivibrio salmonicida (strain LFI1238) GN=ribA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.766e-17
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = -3
Query:  378 AAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHIYGLE 734
            A   G+++YLR  EGRGIGL +KL AY LQ  G +T EAN  LG   D R++   AQML  L + T+KL+TNNP K   ++ YG+ +   V     +KK N+ YL+   +K+ H + L+
Sbjct:   82 AISGGIILYLR-QEGRGIGLYNKLDAYELQSKGMNTYEANNHLGFGDDLRDFKEAAQMLGALNINTIKLVTNNPKKIKDIQDYGITLDEVVHTHAHVKKGNENYLQ---SKVDHGHQLD 196          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_DEHMU (GTP cyclohydrolase-2 (Fragment) OS=Dehalospirillum multivorans GN=ribA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.836e-17
Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            +Q I   G G+++YLR  EGR IGL +K+ AY LQD G DT+EAN +LG   D R Y +   +L    +  ++L+TNNP K   LK   + +  R P+I P    N  YL+  +  MGH+
Sbjct:   25 LQNISLLG-GMIIYLR-QEGRNIGLFNKVNAYALQDQGFDTIEANHQLGFKSDERSYEVVETILEHFKIDKIRLLTNNPKKMSCLK--NIMIIERWPIIIPSNNHNVDYLKTKKEMMGHL 140          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_VIBCH (GTP cyclohydrolase-2 OS=Vibrio cholerae GN=ribA PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.968e-16
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = -3
Query:  393 GVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGH 722
            G+++YLR  EGRGIGL +K+ AY LQ  G +T EAN  LG   D R++   AQML+ LGV+ ++L+TNNP K   L+ +G+ +   V     +K  N+ YL   +AK+ H
Sbjct:   86 GIILYLR-QEGRGIGLYNKIDAYRLQSQGMNTYEANNHLGFGDDLRDFTEAAQMLQALGVKKIRLVTNNPKKIRELQEHGIEIVEVVHTSAHIKDGNENYL---KAKVSH 191          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_VIBF1 (GTP cyclohydrolase-2 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=ribA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 48/110 (43.64%), Postives = 66/110 (60.00%), Query Frame = -3
Query:  393 GVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGH 722
            G+++YLR  EGRGIGL +KL AY LQ  G +T EAN  LG   D R++   AQML  L +  +KL+TNNP K   ++ YG+ +   V     +K+ N+ YL   +A  GH
Sbjct:   86 GIILYLR-QEGRGIGLYNKLDAYELQSQGMNTYEANNHLGFGDDLRDFKEAAQMLEALNISKIKLVTNNPKKIKDIQNYGIEIDEVVNTHAHVKQGNEHYLH-SKAAHGH 193          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_PHOPO (GTP cyclohydrolase-2 OS=Photobacterium phosphoreum GN=ribA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = -3
Query:  378 QIEAAGRGVLVYLRGHEGR-GIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHIYGLE 743
            +I A   G+++YLR  EGR G+GL +K+ AY LQ  G DT EAN  LG   D RE+   AQML  LG++ ++L+TNNP K   L+  G+ +   V     LK+ N+ YL+   +   H +  +
Sbjct:   78 EIMAELGGIILYLR-QEGRWGLGLYNKIDAYKLQSQGMDTYEANNHLGFDDDLREFSEAAQMLTALGIKDIRLVTNNPKKIKDLQQNGINIVEVVGTKAHLKEGNEGYLKAKASHGRHCFNFD 199          
The following BLAST results are available for this feature:
BLAST of CN186207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBA_ALISL6.766e-1742.86GTP cyclohydrolase-2 OS=Aliivibrio salmonicida (st... [more]
RIBA_DEHMU8.836e-1740.83GTP cyclohydrolase-2 (Fragment) OS=Dehalospirillum... [more]
RIBA_VIBCH1.968e-1643.64GTP cyclohydrolase-2 OS=Vibrio cholerae GN=ribA PE... [more]
RIBA_VIBF14.385e-1643.64GTP cyclohydrolase-2 OS=Vibrio fischeri (strain AT... [more]
RIBA_PHOPO1.666e-1539.84GTP cyclohydrolase-2 OS=Photobacterium phosphoreum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186207 ID=CN186207; Name=CN186207; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTGGAACTTAGCATGCCTATCAAAGGACCCCTTAA
ATAATTGGATTTCTTCTGCTAATTTACACCAGGGACAAAAAGAATGAATC
GCTCTTCATCAGTGCAATCAACATCAACATAGAAATTGTTTGAATTGCTG
CTTATGTATGCATACAATATTGAATTTGAATCAATAAATAAATTTTGGGT
TATGAGGTGATAATGCTTCCCTTTTTGTCATGCCAGAGTCTATCTTCAAC
TCGTACTTGAATCACGTGTCCAAACCAAGTAAATTAGTGCAGCTTACGAG
TCAGATACAGTATCAGATGAAGATTTGATACTCGGCTTACCGTTAACGTT
AATGAGATTTGTTAACCGGCCATTAGATTCTAACCCATAAATGTGACCCA
TTTTAGCACGGGGGGGCTCCAGATATCTCTTGTTTTCCTTTTTAAGGGGA
GTTATTAGGGGAACCCTTCCTGCAACTGCCAAACCATAACCCTTGAGTCC
AACATACTTCGAAGGGTTATTTGTCATCAGCTTCATTGTTCGAACACCAA
GATCCCTTAGCATCTGTGCACCAATGCCATATTCCCGTGAGTCAACAGGC
AATCCCAATTCCTCATTTGCTTCAACTGTATCACGCCCATCGTCCTGCAA
GTTATAAGCGCGAAGCTTGTGGCCTAAACCAATGCCCCTTCCCTCATGAC
CACGGAGATAAACTAATACACCCCTGCCAGCAGCCTCAATCTGCTGCATT
G
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