CN186207

Overview
NameCN186207
Unique NameCN186207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_PORGI (Riboflavin biosynthesis protein ribBA OS=Porphyromonas gingivalis GN=ribBA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 59/119 (49.58%), Postives = 83/119 (69.75%), Query Frame = -3
Query:  393 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGH 749
            M++IE  G+G ++YL   EGRGIGL  K++AY LQ+ G DT++AN  LG   D R+YGIGAQ+LR LG++ M+LMTNNP K +GL+ +GL +   +PL T   + N+ YL   + +MGH
Sbjct:  282 MEKIEKEGKGAIIYLN-QEGRGIGLMEKMKAYKLQEQGMDTIDANLCLGHKADERDYGIGAQILRLLGIKKMRLMTNNPVKRIGLEAFGLEIVENIPLETAPNRYNEFYLRTKKERMGH 399          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_PORG3 (Riboflavin biosynthesis protein ribBA OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=ribBA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 59/119 (49.58%), Postives = 83/119 (69.75%), Query Frame = -3
Query:  393 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGH 749
            M++IE  G+G ++YL   EGRGIGL  K++AY LQ+ G DT++AN  LG   D R+YGIGAQ+LR LG++ M+LMTNNP K +GL+ +GL +   +PL T   + N+ YL   + +MGH
Sbjct:  282 MEKIEKEGKGAIIYLN-QEGRGIGLMEKMKAYKLQEQGMDTIDANLCLGHKADERDYGIGAQILRLLGIKKMRLMTNNPVKRIGLEAFGLEIVENIPLETAPNRYNEFYLRTKKERMGH 399          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_PSEPG (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain GB-1) GN=ribA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 66/127 (51.97%), Postives = 80/127 (62.99%), Query Frame = -3
Query:  369 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHIYGLESNG 749
            +Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y +   ML  LGV++++LMTNNP K   L    + VA RVPL T     N+ YL     K+GH+ G E  G
Sbjct:   75 LQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAMCLPMLEHLGVKSLRLMTNNPRKVKALTDMNIVVAERVPLHTGHNPHNRYYLATKAGKLGHMLGNEHQG 200          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_PSEA7 (GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa (strain PA7) GN=ribA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 65/119 (54.62%), Postives = 79/119 (66.39%), Query Frame = -3
Query:  384 IEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHIYG 740
            I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEAN +LG   D R+Y +   ML  LGV +++LMTNNP K   L+ Y + VA RVPL   L K N+RYL     K+GH+ G
Sbjct:   78 IAEEGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANLQLGFGADQRDYAMCQPMLAHLGVSSLRLMTNNPRKVKALESYAVTVAERVPLQKGLNKHNRRYLATKAGKLGHMLG 195          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_ARCFU (GTP cyclohydrolase-2 OS=Archaeoglobus fulgidus GN=ribA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            ++ I+  G+GV +Y+RGHEGRGIGL +KL AY LQ++G+DTV+AN ELG P D R YGI AQ+L DL V++++L+TNNP K   LK YG  +  R P+     + N  YL+  + KMGH+
Sbjct:  255 LKMIDREGKGVAIYMRGHEGRGIGLINKLMAYKLQEEGKDTVDANIELGFPPDMRSYGIAAQILMDLKVKSIRLLTNNPLKIEELKKYGFKIV-REPIEVEPCEVNLPYLKAKKDKMGHL 373          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_NEIG1 (GTP cyclohydrolase-2 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=ribA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.479e-27
Identity = 61/120 (50.83%), Postives = 85/120 (70.83%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            M+ ++A GRG++VYLR  EGRGIGL +K+RAY+LQ+ G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL      EN+RYL+    K+GH+
Sbjct:   76 MRAVQAEGRGIIVYLR-QEGRGIGLINKIRAYHLQEQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPLHVGENLENERYLQTKADKLGHL 194          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_PSEE4 (GTP cyclohydrolase-2 OS=Pseudomonas entomophila (strain L48) GN=ribA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.419e-27
Identity = 65/129 (50.39%), Postives = 81/129 (62.79%), Query Frame = -3
Query:  363 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHIYGLESNGRL 749
            +Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y +   ML  LGV++++LMTNNP K   L    + VA RVPL T     N+ YL     K+GH+ G +  G +
Sbjct:   75 LQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAMCLPMLEHLGVKSLRLMTNNPRKVKALTDMSIKVAERVPLHTGHNPHNRLYLATKADKLGHMMGNKHQGEV 202          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_THEPX (Riboflavin biosynthesis protein ribBA OS=Thermoanaerobacter sp. (strain X514) GN=ribBA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.098e-26
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            M++I   G G+LVYLR  EGRGIGL +K++AY+LQD G DTVEAN +LG P D REY I AQ+L+D+GV+ +++MTNNP K   L  YGL V  RV +       N++YL+  + KMGH+
Sbjct:  275 MERIGQEG-GILVYLR-QEGRGIGLLNKIKAYHLQDQGLDTVEANIKLGFPPDLREYNIAAQILKDIGVKKIRIMTNNPQKITELSDYGLDVVERVSIEICPNHYNEKYLKTKKEKMGHL 392          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBBA_THEP3 (Riboflavin biosynthesis protein ribBA OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ribBA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.740e-26
Identity = 63/120 (52.50%), Postives = 85/120 (70.83%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            M++I   G GVLVYLR  EGRGIGL +K++AY+LQD G DTVEAN +LG P D REY I AQ+L+D+GV+ +++MTNNP K + L  YGL V  RV +       N++YL+  + +MGH+
Sbjct:  275 MERIGQEG-GVLVYLR-QEGRGIGLLNKIKAYHLQDQGLDTVEANIKLGFPPDLREYSIAAQILKDIGVKKIRIMTNNPQKIMELSDYGLDVVERVSIEICPNHYNEKYLKTKKERMGHL 392          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_HAHCH (GTP cyclohydrolase-2 OS=Hahella chejuensis (strain KCTC 2396) GN=ribA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.973e-26
Identity = 61/120 (50.83%), Postives = 77/120 (64.17%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            ++ I A GRG+L+YLR  EGRGIGL +K+RAYNLQD G DTVEANE+LG   D R+Y +   ML  LG+  ++LMTNNP K   L   G+ V  RVPL       N+ YL     K+GH+
Sbjct:   75 LRSIAAEGRGILLYLR-QEGRGIGLLNKIRAYNLQDQGADTVEANEQLGFAADMRDYSMCKPMLYHLGISRIRLMTNNPRKVDSLTKLGIEVVERVPLEVGRNPHNRNYLATKAGKLGHL 193          
The following BLAST results are available for this feature:
BLAST of CN186207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBBA_PORGI1.898e-2749.58Riboflavin biosynthesis protein ribBA OS=Porphyrom... [more]
RIBBA_PORG31.898e-2749.58Riboflavin biosynthesis protein ribBA OS=Porphyrom... [more]
RIBA_PSEPG1.898e-2751.97GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]
RIBA_PSEA71.898e-2754.62GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa (st... [more]
RIBA_ARCFU1.898e-2750.83GTP cyclohydrolase-2 OS=Archaeoglobus fulgidus GN=... [more]
RIBA_NEIG12.479e-2750.83GTP cyclohydrolase-2 OS=Neisseria gonorrhoeae (str... [more]
RIBA_PSEE49.419e-2750.39GTP cyclohydrolase-2 OS=Pseudomonas entomophila (s... [more]
RIBBA_THEPX2.098e-2652.50Riboflavin biosynthesis protein ribBA OS=Thermoana... [more]
RIBBA_THEP32.740e-2652.50Riboflavin biosynthesis protein ribBA OS=Thermoana... [more]
RIBA_HAHCH7.973e-2650.83GTP cyclohydrolase-2 OS=Hahella chejuensis (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186207 ID=CN186207; Name=CN186207; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTGGAACTTAGCATGCCTATCAAAGGACCCCTTAA
ATAATTGGATTTCTTCTGCTAATTTACACCAGGGACAAAAAGAATGAATC
GCTCTTCATCAGTGCAATCAACATCAACATAGAAATTGTTTGAATTGCTG
CTTATGTATGCATACAATATTGAATTTGAATCAATAAATAAATTTTGGGT
TATGAGGTGATAATGCTTCCCTTTTTGTCATGCCAGAGTCTATCTTCAAC
TCGTACTTGAATCACGTGTCCAAACCAAGTAAATTAGTGCAGCTTACGAG
TCAGATACAGTATCAGATGAAGATTTGATACTCGGCTTACCGTTAACGTT
AATGAGATTTGTTAACCGGCCATTAGATTCTAACCCATAAATGTGACCCA
TTTTAGCACGGGGGGGCTCCAGATATCTCTTGTTTTCCTTTTTAAGGGGA
GTTATTAGGGGAACCCTTCCTGCAACTGCCAAACCATAACCCTTGAGTCC
AACATACTTCGAAGGGTTATTTGTCATCAGCTTCATTGTTCGAACACCAA
GATCCCTTAGCATCTGTGCACCAATGCCATATTCCCGTGAGTCAACAGGC
AATCCCAATTCCTCATTTGCTTCAACTGTATCACGCCCATCGTCCTGCAA
GTTATAAGCGCGAAGCTTGTGGCCTAAACCAATGCCCCTTCCCTCATGAC
CACGGAGATAAACTAATACACCCCTGCCAGCAGCCTCAATCTGCTGCATT
G
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