CN186207

Overview
NameCN186207
Unique NameCN186207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_SACD2 (GTP cyclohydrolase-2 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=ribA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.041e-25
Identity = 61/122 (50.00%), Postives = 75/122 (61.48%), Query Frame = -3
Query:  384 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHIYG 749
            M +I   GRG + YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   M   LG+  +KLMTNNP K   L  YG+ +  R+P  T     N  YLE  + K+GH++G
Sbjct:   75 MHKIAIEGRGAIFYLR-QEGRGIGLLNKIRAYKLQDCGADTVEANERLGFGADMRDYSILKPMFEHLGIAQVKLMTNNPRKIDALTQYGINIVNRIPHETGRNPHNADYLETKKGKLGHMFG 195          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_AERHH (GTP cyclohydrolase-2 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=ribA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.360e-25
Identity = 61/121 (50.41%), Postives = 81/121 (66.94%), Query Frame = -3
Query:  387 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHIY 749
            ++ I  AGRGVL+Y+R  EGRGIGL +K+RAY+LQD G DTVEAN  LG   D R+Y I A ML+ L V+++KLMTNNP K   ++ +G+ VA RVPL       N+ YL     K+ H++
Sbjct:   76 LENIAKAGRGVLLYVR-QEGRGIGLLNKIRAYHLQDQGADTVEANVALGFAADMRDYTICADMLKQLEVKSLKLMTNNPRKMKAMESFGIPVAERVPLQEGRNPHNEFYLSTKANKLDHMF 195          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_SHEAM (GTP cyclohydrolase-2 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=ribA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.030e-25
Identity = 62/124 (50.00%), Postives = 80/124 (64.52%), Query Frame = -3
Query:  378 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHIYGLE 749
            MQ+I   GRG ++YLR  EGRGIGL +K+RAY LQD G +TVEANE+LG   D R+Y + A ML  LG+  +KLMTNNP K   +K  G+ V  RVPL     + N+ YL+    K+GH+   E
Sbjct:   75 MQRIAETGRGFILYLR-QEGRGIGLLNKIRAYELQDKGANTVEANEQLGFAADMRKYDMIAPMLAHLGISRVKLMTNNPRKVNAMKDVGMDVVERVPLQVGKNRYNEAYLKTKSDKLGHMMSEE 197          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_TERTT (GTP cyclohydrolase-2 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=ribA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.957e-25
Identity = 60/120 (50.00%), Postives = 75/120 (62.50%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            M +I   GRG + YLR  EGRGIGL +K+RAY+LQD G DTVEANE LG   D R+Y +   M   +G+  +KLMTNNP K   L G G+ +A R+P  T     N  YLE  R K+GH+
Sbjct:   75 MHRISIEGRGAIFYLR-QEGRGIGLVNKIRAYHLQDKGADTVEANEALGFGADMRDYSMLKPMFEKMGISRVKLMTNNPRKIDALIGLGIDIAERLPHETGRNPHNSHYLETKRGKLGHL 193          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_SHESH (GTP cyclohydrolase-2 OS=Shewanella sediminis (strain HAW-EB3) GN=ribA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.750e-25
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            MQ I  AG+G ++YLR  EGRGIGL +K+RAY LQD G +TVEANE LG P D R+Y +   M+  +G++ +KLMTNNP K   +K  G+ V  R+PL     + N+ YL+    ++GH+
Sbjct:   75 MQNIAEAGQGFILYLR-QEGRGIGLLNKIRAYELQDQGANTVEANERLGFPADMRKYDMILPMMEKIGIKQVKLMTNNPRKVKAMKELGIEVVERIPLQVGKNRYNEGYLKTKSTELGHM 193          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_SHELP (GTP cyclohydrolase-2 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ribA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.750e-25
Identity = 60/120 (50.00%), Postives = 79/120 (65.83%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            MQ I  AG+G ++YLR  EGRGIGL +K+RAY LQD G +TVEANE LG   D R+Y +   ML  +GV+ +KLMTNNP K   +K  G+AV  RVPL     + N+ YL+    ++GH+
Sbjct:   75 MQNIAEAGQGFILYLR-QEGRGIGLLNKIRAYELQDQGANTVEANERLGFAADMRKYDMIKPMLEKIGVQQVKLMTNNPRKVKAMKELGIAVIERVPLQVGKNRYNEAYLKTKSTELGHM 193          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_SHESW (GTP cyclohydrolase-2 OS=Shewanella sp. (strain W3-18-1) GN=ribA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.816e-25
Identity = 58/120 (48.33%), Postives = 79/120 (65.83%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            MQ I   G G ++YLR  EGRGIGL +K+RAY LQD G +TVEANE+LG P D R+Y +   ML  +GV+ ++LMTNNP K   +K +G+ V  RVPL     + N+ YL+    ++GH+
Sbjct:   75 MQNIAETGCGFILYLR-QEGRGIGLLNKIRAYELQDKGANTVEANEQLGFPADMRKYDMIKPMLEQIGVKHVRLMTNNPRKVKAMKEFGIEVVERVPLQVGKNRYNEAYLKTKSTELGHM 193          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_SHEPC (GTP cyclohydrolase-2 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=ribA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.816e-25
Identity = 58/120 (48.33%), Postives = 79/120 (65.83%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            MQ I   G G ++YLR  EGRGIGL +K+RAY LQD G +TVEANE+LG P D R+Y +   ML  +GV+ ++LMTNNP K   +K +G+ V  RVPL     + N+ YL+    ++GH+
Sbjct:   75 MQNIAETGCGFILYLR-QEGRGIGLLNKIRAYELQDKGANTVEANEQLGFPADMRKYDMIKPMLEQIGVKHVRLMTNNPRKVKAMKEFGIEVVERVPLQVGKNRYNEAYLKTKSTELGHM 193          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_SHESR (GTP cyclohydrolase-2 OS=Shewanella sp. (strain MR-7) GN=ribA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.504e-24
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            MQ I   G G ++YLR  EGRGIGL +K+RAY LQD G +TVEANE+LG P D R+Y +   ML  +GV+ ++LMTNNP K   +K  G+ V  RVPL     + N+ YL+    ++GH+
Sbjct:   75 MQNIAETGSGFILYLR-QEGRGIGLLNKIRAYELQDKGANTVEANEQLGFPADMRKYDMIQPMLEQIGVKHVRLMTNNPRKVKAMKEIGIEVVERVPLQVGKNRYNEAYLKTKSTELGHM 193          
BLAST of CN186207 vs. ExPASy Swiss-Prot
Match: RIBA_SHESM (GTP cyclohydrolase-2 OS=Shewanella sp. (strain MR-4) GN=ribA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.504e-24
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = -3
Query:  390 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPLKKENKRYLEPPRAKMGHI 749
            MQ I   G G ++YLR  EGRGIGL +K+RAY LQD G +TVEANE+LG P D R+Y +   ML  +GV+ ++LMTNNP K   +K  G+ V  RVPL     + N+ YL+    ++GH+
Sbjct:   75 MQNIAETGSGFILYLR-QEGRGIGLLNKIRAYELQDKGANTVEANEQLGFPADMRKYDMIQPMLEQIGVKHVRLMTNNPRKVKAMKEIGIEVVERVPLQVGKNRYNEAYLKTKSTELGHM 193          
The following BLAST results are available for this feature:
BLAST of CN186207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBA_SACD21.041e-2550.00GTP cyclohydrolase-2 OS=Saccharophagus degradans (... [more]
RIBA_AERHH1.360e-2550.41GTP cyclohydrolase-2 OS=Aeromonas hydrophila subsp... [more]
RIBA_SHEAM3.030e-2550.00GTP cyclohydrolase-2 OS=Shewanella amazonensis (st... [more]
RIBA_TERTT3.957e-2550.00GTP cyclohydrolase-2 OS=Teredinibacter turnerae (s... [more]
RIBA_SHESH6.750e-2547.50GTP cyclohydrolase-2 OS=Shewanella sediminis (stra... [more]
RIBA_SHELP6.750e-2550.00GTP cyclohydrolase-2 OS=Shewanella loihica (strain... [more]
RIBA_SHESW8.816e-2548.33GTP cyclohydrolase-2 OS=Shewanella sp. (strain W3-... [more]
RIBA_SHEPC8.816e-2548.33GTP cyclohydrolase-2 OS=Shewanella putrefaciens (s... [more]
RIBA_SHESR1.504e-2448.33GTP cyclohydrolase-2 OS=Shewanella sp. (strain MR-... [more]
RIBA_SHESM1.504e-2448.33GTP cyclohydrolase-2 OS=Shewanella sp. (strain MR-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186207 ID=CN186207; Name=CN186207; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTGGAACTTAGCATGCCTATCAAAGGACCCCTTAA
ATAATTGGATTTCTTCTGCTAATTTACACCAGGGACAAAAAGAATGAATC
GCTCTTCATCAGTGCAATCAACATCAACATAGAAATTGTTTGAATTGCTG
CTTATGTATGCATACAATATTGAATTTGAATCAATAAATAAATTTTGGGT
TATGAGGTGATAATGCTTCCCTTTTTGTCATGCCAGAGTCTATCTTCAAC
TCGTACTTGAATCACGTGTCCAAACCAAGTAAATTAGTGCAGCTTACGAG
TCAGATACAGTATCAGATGAAGATTTGATACTCGGCTTACCGTTAACGTT
AATGAGATTTGTTAACCGGCCATTAGATTCTAACCCATAAATGTGACCCA
TTTTAGCACGGGGGGGCTCCAGATATCTCTTGTTTTCCTTTTTAAGGGGA
GTTATTAGGGGAACCCTTCCTGCAACTGCCAAACCATAACCCTTGAGTCC
AACATACTTCGAAGGGTTATTTGTCATCAGCTTCATTGTTCGAACACCAA
GATCCCTTAGCATCTGTGCACCAATGCCATATTCCCGTGAGTCAACAGGC
AATCCCAATTCCTCATTTGCTTCAACTGTATCACGCCCATCGTCCTGCAA
GTTATAAGCGCGAAGCTTGTGGCCTAAACCAATGCCCCTTCCCTCATGAC
CACGGAGATAAACTAATACACCCCTGCCAGCAGCCTCAATCTGCTGCATT
G
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