CN186181
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 1.931e-43 Identity = 90/177 (50.85%), Postives = 118/177 (66.67%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q V TWFNQP +I PRP AGP+RP+V T++Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+PEEL ATQ+ GP MPI + ++++ K+FKA+ LR+ R N R FG R Sbjct: 19 QRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2) HSP 1 Score: 174.866 bits (442), Expect = 4.302e-43 Identity = 89/177 (50.28%), Postives = 118/177 (66.67%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q V TWFNQP +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R Sbjct: 19 QQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3) HSP 1 Score: 174.096 bits (440), Expect = 7.338e-43 Identity = 89/177 (50.28%), Postives = 118/177 (66.67%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q V TWFNQP +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R Sbjct: 19 QQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4) HSP 1 Score: 173.711 bits (439), Expect = 9.583e-43 Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q V TWFNQP +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP MP+ + +T++ K+FKA+ LR+ R N R FG R Sbjct: 19 QRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3) HSP 1 Score: 173.326 bits (438), Expect = 1.252e-42 Identity = 90/177 (50.85%), Postives = 117/177 (66.10%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q V TWFNQP +I PRP +GPLRPVV T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+ E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R Sbjct: 19 QRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3) HSP 1 Score: 170.629 bits (431), Expect = 8.113e-42 Identity = 88/177 (49.72%), Postives = 117/177 (66.10%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q V TWFNQP +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP M I + +T++ K+FKA+ LR+ R N R FG R Sbjct: 19 QRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 5.442e-38 Identity = 82/177 (46.33%), Postives = 111/177 (62.71%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q +VKTWFNQP + PRP AGPLRPVV T++Y+ K+RAGRGFTL E++AAG+ A TIG++VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K G++ EE ATQ++GP MP+ P +T++ K FKAY LR R + G R Sbjct: 18 QRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIR 193
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.286e-36 Identity = 86/177 (48.59%), Postives = 109/177 (61.58%), Query Frame = -1 Query: 227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757 Q YVKTWFNQP KI PRP +RP V T++YNMK+RAGRGFTLEELKAAG+ +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+ A T V +PI E E +T++ K+F A+ L ER R+ GAR Sbjct: 19 QRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQE-AVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.652e-36 Identity = 76/165 (46.06%), Postives = 106/165 (64.24%), Query Frame = -1 Query: 263 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLR 757 Q VKTWFNQP +I PRP +GPLRP+V+ T +YNMK+R+GRGF+L+E++AAG+ K A TIG++VDHRR+N S+EGLQ NV RLK YKAKL++FP K +A D+ +E+ ATQ++ P +PI ++ K T + A+ +R Sbjct: 18 QFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 5.631e-35 Identity = 82/174 (47.13%), Postives = 107/174 (61.49%), Query Frame = -1 Query: 227 FNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----IAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 736 FNQP I PRP AG LRP V QT KYN +LR GRGF+L+ELKAAGI KK A IG+SVD RR+N+S+E LQ NVQRLK Y++KL++FP++ K GD+ EE+ ATQ++G +P I PEK +T + + K +D+LR R ++R G R Sbjct: 2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEKARA----ITDEERKVKVFDRLRQARAHKRLAGKR 171 The following BLAST results are available for this feature:
BLAST of CN186181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186181 ID=CN186181; Name=CN186181; organism=Citrus sinensis; type=EST; length=757bpback to top |