CN186181

Overview
NameCN186181
Unique NameCN186181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:108..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.931e-43
Identity = 90/177 (50.85%), Postives = 118/177 (66.67%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q  V TWFNQP               +I PRP AGP+RP+V   T++Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI       +   ++++ K+FKA+  LR+ R N R FG R
Sbjct:   19 QRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.302e-43
Identity = 89/177 (50.28%), Postives = 118/177 (66.67%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q  V TWFNQP               +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   19 QQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 7.338e-43
Identity = 89/177 (50.28%), Postives = 118/177 (66.67%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q  V TWFNQP               +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   19 QQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 173.711 bits (439), Expect = 9.583e-43
Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q  V TWFNQP               +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   19 QRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.252e-42
Identity = 90/177 (50.85%), Postives = 117/177 (66.10%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q  V TWFNQP               +I PRP +GPLRPVV   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+  E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   19 QRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 8.113e-42
Identity = 88/177 (49.72%), Postives = 117/177 (66.10%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q  V TWFNQP               +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   19 QRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.442e-38
Identity = 82/177 (46.33%), Postives = 111/177 (62.71%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q +VKTWFNQP                + PRP AGPLRPVV   T++Y+ K+RAGRGFTL E++AAG+    A TIG++VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P      +T++ K FKAY  LR  R   +  G R
Sbjct:   18 QRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIR 193          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.286e-36
Identity = 86/177 (48.59%), Postives = 109/177 (61.58%), Query Frame = -1
Query:  227 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 757
            Q YVKTWFNQP               KI PRP    +RP V   T++YNMK+RAGRGFTLEELKAAG+ +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+     A  T V    +PI  E    E   +T++ K+F A+  L  ER   R+ GAR
Sbjct:   19 QRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQE-AVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.652e-36
Identity = 76/165 (46.06%), Postives = 106/165 (64.24%), Query Frame = -1
Query:  263 QNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLR 757
            Q  VKTWFNQP               +I PRP +GPLRP+V+  T +YNMK+R+GRGF+L+E++AAG+  K A TIG++VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PI      ++  K T     + A+  +R
Sbjct:   18 QFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182          
BLAST of CN186181 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.631e-35
Identity = 82/174 (47.13%), Postives = 107/174 (61.49%), Query Frame = -1
Query:  227 FNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----IAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 736
            FNQP                I PRP AG LRP V  QT KYN +LR GRGF+L+ELKAAGI KK A  IG+SVD RR+N+S+E LQ NVQRLK Y++KL++FP++  K   GD+  EE+  ATQ++G  +P    I PEK       +T + +  K +D+LR  R ++R  G R
Sbjct:    2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEKARA----ITDEERKVKVFDRLRQARAHKRLAGKR 171          
The following BLAST results are available for this feature:
BLAST of CN186181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CHICK1.931e-4350.8560S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_RAT4.302e-4350.2860S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]
RL13_MOUSE7.338e-4350.2860S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_HUMAN9.583e-4349.7260S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_BOVIN1.252e-4250.8560S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_CRIGR8.113e-4249.7260S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_SPOFR5.442e-3846.3360S ribosomal protein L13 OS=Spodoptera frugiperda... [more]
RL13_SCHPO2.286e-3648.5960S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_SCHMA6.652e-3646.0660S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_LUMRU5.631e-3547.1360S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186181 ID=CN186181; Name=CN186181; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTCAAACCAAAACAACATTGGATAGGCCCTTTGCA
AATAATATAACCAAGAAATCTTCCCACATTCAAAATAAAATAACAATTTC
AAGCCTAAAGCTAACAGATTGAAATCACTATAACAAAATGCCAAAAACAG
GCCCACATTCAAAGTGTTGCTTAAACAAGTTTTTTTACTTCTTCTCTTCC
TTTTCAGCCTCTGCAGCCTTCTTCATCCTGGCACCAAAATGGCGCTCGTT
CACACGCTCGATACGGAGTTTGTCATAAGCCTTGAAGGACTTCATATCTT
GAGTAACCTTAACAAGCTCGACAGTAGGCTTCTCAGGAGCAATGGGCATG
TAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTCAGGGGCAGAATC
ACCAGCCTTGAACTTGCGAGCACGTCTTGGGAAAACAACCAACTTAGCCT
TGTAAGTCTTGAGCCTCTGAACATTAGATTGAAGACCCTCAAGAGAACGG
TTCTTGCGTCGATGATCGACTGAAACACCAATTGTCGGAGCCAGTTTCTT
GGGAATTCCAGCAGCCTTGAGTTCCTCAAGAGTAAAGCCTCTGCCAGCCC
TTAATTTCATGTTGTATTTCAAAGTCTGGCCATGAACGACGGGACGAAGC
GGCCCAGCAGTAGGGCGAGGGAAGATTTTAACGGCCTTCTTTTGACGAGC
GACTCGTCGTCGATTTTTGCGAGCAGGTTGGTTGAACCAAGTCTTGACAT
AGTTCTG
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