CX046757

Overview
NameCX046757
Unique NameCX046757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046757_ssr383 microsatellite CX046757_ssr383:383..392. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046757_ssr393 microsatellite CX046757_ssr393:393..414. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_CHICK (Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 7.205e-17
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 227
            G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG     Q L+  DK +DGS+ +     V YVPLT ++ Q
Sbjct:  146 GYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLEDGSVKMKPLMGVIYVPLTDKEKQ 222          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT2_POLSJ (Protein-L-isoaspartate O-methyltransferase 2 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=pcm2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.563e-14
Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSR 218
            GW E APYDAI V AAA  IP  LI QLK GGRMVIPVG  F  Q L +V+KN+DG++S      V +VPLT +
Sbjct:  137 GWEEHAPYDAILVTAAASHIPPPLIRQLKAGGRMVIPVGAAFMVQQLMLVEKNRDGTVSTRQILPVAFVPLTGQ 210          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT1_RALEH (Protein-L-isoaspartate O-methyltransferase 1 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=pcm1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.347e-14
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSR 218
            GW E APYDAI V AAA  +P  LI QLKPGGRMVIPVG  F  Q L +V+K++DG++S      VR+VPL  +
Sbjct:  185 GWDEHAPYDAIVVTAAASHVPPPLIRQLKPGGRMVIPVGAQFLTQYLLLVEKSEDGTVSTRQILPVRFVPLVGK 258          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_PYRHO (Protein-L-isoaspartate O-methyltransferase OS=Pyrococcus horikoshii GN=pcm PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 9.738e-14
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 239
            G+P  +PYDAI V A APEIP+ L++QLKPGG+++IPVG  +++Q+L  V K +DGS+ I +   V +VPL        GW
Sbjct:  142 GFPPKSPYDAIIVTAGAPEIPKPLVEQLKPGGKLIIPVGSYHLWQELLEVIKREDGSIKIKNHGGVAFVPLIGE----HGW 218          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT1_NITMU (Protein-L-isoaspartate O-methyltransferase 1 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=pcm1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.272e-13
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPL 209
            GWPE AP+DAI V AAA  +P  L+ QLKPGGRMV+P+G  F  Q L +V+K  DGS++      VR+VPL
Sbjct:  162 GWPEAAPFDAILVTAAASHVPPPLLKQLKPGGRMVVPLGAPFMTQYLMLVEKQPDGSVTTHQIVPVRFVPL 232          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_UNCMA (Protein-L-isoaspartate O-methyltransferase OS=Uncultured methanogenic archaeon RC-I GN=pcm PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.661e-13
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 218
            G P+FAPYD I V AAAP++PQ L+DQLK  GR+VIPVG  FQ L +V+K + G +    +  V +VPL  +
Sbjct:  112 GLPDFAPYDRISVAAAAPDVPQPLVDQLKDPGRLVIPVGRYFQQLMLVEK-KGGQIITTDKGGVAFVPLLGK 182          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT2_ARCFU (Protein-L-isoaspartate O-methyltransferase 2 OS=Archaeoglobus fulgidus GN=pcm2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.661e-13
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPL 209
            G+ + APYD I+V AAAP+IP+ LI+QLKP GRMVIPVG+  Q L +V+K++ G++   +  SVR+VPL
Sbjct:  139 GYEKEAPYDKIYVTAAAPDIPKPLIEQLKPRGRMVIPVGDSVQWLIIVEKDESGNVRKKNWGSVRFVPL 207          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_GEOSL (Protein-L-isoaspartate O-methyltransferase OS=Geobacter sulfurreducens GN=pcm PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.169e-13
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDLKV-VDKNQDGSLSIWSETSVRYVPLTSR 218
            GW + AP+DAI V A AP+IPQ  IDQLKPGGR+VIPVG  F+ + V V K +DGS+   + T  R+V L  +
Sbjct:  128 GWEDEAPFDAIIVTAGAPDIPQQYIDQLKPGGRLVIPVGTQFEQVLVRVVKQEDGSVERENITGCRFVKLVGK 200          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_HYPBU (Protein-L-isoaspartate O-methyltransferase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=pcm PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.833e-13
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF-QDLKVVDKNQDGSLSIWSETSVRYVPL 209
            G+PE APYD I V AAAP+IP  LIDQLKPGG+MVIP+G+ + Q L VV K +DG +     T   +VPL
Sbjct:  156 GYPEKAPYDRIIVTAAAPDIPGPLIDQLKPGGKMVIPIGDRYLQHLYVVVKTRDGKIESRPVTPCLFVPL 225          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_DICDI (Probable protein-L-isoaspartate O-methyltransferase OS=Dictyostelium discoideum GN=pcmA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.833e-13
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAP--EIPQALIDQLKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQL 230
            GW +   YD I++GAA    ++ + LIDQLK GGR+V+PVG  N F +L VVDKN+DG +SI S   VR+VPLTS++ QL
Sbjct:  191 GWKQLK-YDIIYLGAAIESLQVARELIDQLKNGGRIVMPVGKSNDFHELMVVDKNEDGIVSIKSLGVVRFVPLTSKENQL 269          
The following BLAST results are available for this feature:
BLAST of CX046757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
PIMT_CHICK7.205e-1758.44Protein-L-isoaspartate(D-aspartate) O-methyltransf... [more]
PIMT2_POLSJ2.563e-1458.11Protein-L-isoaspartate O-methyltransferase 2 OS=Po... [more]
PIMT1_RALEH3.347e-1456.76Protein-L-isoaspartate O-methyltransferase 1 OS=Ra... [more]
PIMT_PYRHO9.738e-1448.15Protein-L-isoaspartate O-methyltransferase OS=Pyro... [more]
PIMT1_NITMU1.272e-1354.93Protein-L-isoaspartate O-methyltransferase 1 OS=Ni... [more]
PIMT_UNCMA1.661e-1351.39Protein-L-isoaspartate O-methyltransferase OS=Uncu... [more]
PIMT2_ARCFU1.661e-1355.07Protein-L-isoaspartate O-methyltransferase 2 OS=Ar... [more]
PIMT_GEOSL2.169e-1353.42Protein-L-isoaspartate O-methyltransferase OS=Geob... [more]
PIMT_HYPBU2.833e-1357.14Protein-L-isoaspartate O-methyltransferase OS=Hype... [more]
PIMT_DICDI2.833e-1353.75Probable protein-L-isoaspartate O-methyltransferas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10A06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A06-B11-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046757 ID=CX046757; Name=CX046757; organism=Citrus sinensis; type=EST; length=467bp
AAGGTTGGCCAGAGTTTGCTCCCTATGATGCAATACATGTTGGAGCAGCA
GCCCCAGAAATTCCTCAGGCACTTATTGACCAGTTGAAACCTGGAGGCAG
AATGGTGATTCCAGTTGGTAATATATTTCAGGATTTGAAGGTGGTTGACA
AGAACCAAGATGGCTCTCTTAGCATCTGGAGTGAAACCTCTGTTCGTTAT
GTCCCTCTTACCAGTCGGGATGCCCAGTTGCGGGGCTGGTGAGGTTGATT
TCTTTTTCACTTGAAGATGGTTGGCAAGCTTTTGGTTATAGGACCAGGTT
GGAATGTGGAACAGAATCTCACTCTAATCCAGTATCATTGTGGGTTTTTT
TGGTTTTTTTTTCTCCTCTAAATTTCCTTGTATGTGTGTGTGTATATATA
TATATATATATATAATAAGCAAGTTATGCAAGGTTGTCTAGTTTCCATTC
NAAAAAAAAAAAAAAAA
back to top