CN186176

Overview
NameCN186176
Unique NameCN186176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.358e-66
Identity = 124/227 (54.63%), Postives = 172/227 (75.77%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQDIAI+TG +  + ++GL +E   ++ +G  RK++I KD+TTI+AD  + +E++ RIAQ++K+L E+DS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGG  L+HLS  V  +K  L + +E++GADIV++AL AP + IA+N+             ++++ GYN +T +YE+++ AG++DPA V R AL
Sbjct:  278 GFGDRRKAMLQDIAILTGGQLISEEVGLSLEMVDLDMMGIGRKISINKDNTTIVADGGTAEEVKKRIAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTDFSVGYNVITGEYEDLIAAGILDPAMVVRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.502e-65
Identity = 127/226 (56.19%), Postives = 168/226 (74.34%), Query Frame = 3
Query:    9 FGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            FG+RRKA+L+DIAI+TG +  + D+G+ +EN +++ +G ARK+T+ KD TTI+ D ++K  ++ R+AQ++K+L  TDS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGGA L+HLS  +PA K  L +A+E++GADIV +AL AP   IAHNA            + E   G++A+T  Y +M   G++DPAKV R AL
Sbjct:  280 FGDRRKAMLEDIAILTGGQLISEDIGIKLENVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKANL-NAEEQVGADIVCRALQAPLYQIAHNAGLEGSVVVEKVLEKEMPFGFDALTGTYVDMFAQGIVDPAKVVRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.735e-65
Identity = 125/226 (55.31%), Postives = 168/226 (74.34%), Query Frame = 3
Query:    9 FGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            FG+RRKA+L+DIAI+TG +  + D+G+ ++  +++ +G ARK+T+ KD TTI+ D ++K  ++ R+AQ++K+L  TDS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGGA L+HLS  +PA K KL +A+E++GA+IV +AL AP   IAHNA            + E   G++A+T  Y +M   G++DPAKV R AL
Sbjct:  280 FGDRRKAMLEDIAILTGGQLISEDVGIKLDKVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKAKL-NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEKVLEKEMPFGFDALTGTYVDMFAQGIVDPAKVVRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.310e-64
Identity = 128/227 (56.39%), Postives = 166/227 (73.13%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQDIA++TG +  + D+GL +EN +++ LG ARKVTI KD TTI+A   +K  ++ RIAQ+ K++ +TDS +D EKL ER+AKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGG  L+HL+  + AIK  L D DE+ GAD++ +AL AP   IA NA            + ++  GY+AM  ++ +ML AGV DPAKV R AL
Sbjct:  279 GFGDRRKAMLQDIAVLTGGDVISEDIGLKLENVTIDMLGKARKVTITKDKTTIVAGTDNKAAVEKRIAQIHKQMEDTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLLHLTKKIDAIKAGLAD-DEKTGADLIARALEAPLRQIADNAGVEGSVIAQKVRELDFNIGYDAMKGEFVDMLAAGVADPAKVVRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.132e-63
Identity = 129/227 (56.83%), Postives = 168/227 (74.01%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQDIA++T  E  + D G+ +EN + +QLG ARK+TI KD+TTI+A+  ++  ++AR AQ+K+++ ETDS YD EKL ER+AKLSGGVAVIKVGAATETEL+DRKLRIEDA NAT AAI EGIVPGGG AL+HL+  +    D L   +E++GA I+QKAL  P   IA NA            + E+  G+NAMT++YE+++ AG+IDP KVTR AL
Sbjct:  279 GFGDRRKAMLQDIAVLTDGEVISEDTGIKLENVTTDQLGKARKMTITKDNTTIVAEG-NEAAVKARCAQIKQQIEETDSEYDREKLQERLAKLSGGVAVIKVGAATETELKDRKLRIEDAVNATKAAIAEGIVPGGGTALLHLAAGMGGFIDSL-SGEEKIGARIIQKALEGPLRQIAENAGLEGSVIAEKVRNLEFNFGFNAMTNEYEDLVAAGIIDPVKVTRSAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.007e-61
Identity = 125/227 (55.07%), Postives = 164/227 (72.25%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFGERRKALLQDIAI+T  +  + ++GL ++  S++ L TAR +TI K++TTI+A   +K EIQ RI Q++K+L ETDS YD EKL ERIAKL+GG+AVIKVGA  ETEL+DRKLRIE+A NAT AA+ E I PGGG  L++L+  V  IK   E+ +E++GADIV++AL AP   IA NA            DS++  GYNA T ++E+++ AG+IDPAKV R AL
Sbjct:  278 GFGERRKALLQDIAILTDGQLISEEIGLSLDTASIDALCTARTITIDKENTTIVAGTTTKPEIQKRIGQIRKQLEETDSEYDKEKLQERIAKLAGGIAVIKVGAVPETELKDRKLRIENALNATKAAVAESIGPGGGKTLIYLASKVDPIKAYFEE-EEKIGADIVKRALEAPLRQIADNAGEEGSVIVSRVKDSDFNVGYNAATGEFEDLIAAGIIDPAKVVRSAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.931e-61
Identity = 121/226 (53.54%), Postives = 165/226 (73.01%), Query Frame = 3
Query:    9 FGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            FG+RRKA+LQDIA++TG +  + ++GL + + +   LG A+K+TI KD+T I+A   +K ++ ARIAQ+++ L ETDS YD EKL ERIAKL+GGVAVIKVGA TETEL++RKLRIEDA NAT AAIEEG+VPGGG  L+HL+  + +++  L  ADE+LG +IV +AL AP   IA NA            D ++  GYNA+T +YE+++ +G++DPAKV R AL
Sbjct:  280 FGDRRKAILQDIAVLTGGQVISEEVGLSLADANSSVLGKAQKITISKDTTIIVAGDENKADVAARIAQIRRSLEETDSDYDREKLQERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEGVVPGGGTTLLHLASALTSLQASLTVADEKLGVEIVARALEAPLRQIADNAGAEGSVVVEKLRDKDFNFGYNALTGQYEDLVASGILDPAKVVRSAL 505          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.529e-61
Identity = 122/228 (53.51%), Postives = 166/228 (72.81%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQDIAI+TG +F + + G+ +EN +++ LG A KV   KD TTII    +K +I+ARIAQ+KK+L ETDS +D EKL ER+AKL+GGVAVIKVGAATE EL+++K RIEDA +AT AA+EEGIVPGGG AL+     + A+ D K+++ DER+G +IV+++L  P  LIA+NA            + +   GY+A  D++ NM +AG++DPAKVTR AL
Sbjct:  280 GFGDRRKAMLQDIAILTGGQFISEETGIKLENVTLDMLGRAEKVRANKDKTTIIGGKGNKKDIEARIAQIKKQLEETDSEFDREKLQERLAKLAGGVAVIKVGAATEVELKEKKHRIEDALSATKAAVEEGIVPGGGVALLRT---IKALDDVKVDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKVKEMDGPMGYDAANDRFVNMFEAGIVDPAKVTRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.900e-60
Identity = 126/227 (55.51%), Postives = 159/227 (70.04%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG    + DLGL +++T ++QLG A KVT+ KDSTTI+  A SKD I  R+ Q+KK++A+T S +D EKL ER+AKL+GGVAVIKVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV +   +     K +  D + G +IV KAL AP   IA NA              +   GYNA TDK+ENM++AG+IDP KVTR AL
Sbjct:  278 GFGDRRKAMLEDIAILTGGTVISSDLGLELKDTKIDQLGKAGKVTVTKDSTTIVEGAGSKDAISERVDQIKKQIADTTSDFDREKLQERLAKLAGGVAVIKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDVMKSIQG-NVKGDSQDAQTGVNIVMKALGAPVRQIAENAGKDGAVILDHLEHEDPEIGYNAATDKWENMVKAGIIDPTKVTRSAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_DICTD (60 kDa chaperonin OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=groL PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.241e-60
Identity = 121/228 (53.07%), Postives = 164/228 (71.93%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQDIAI+TG +F + + G+ +EN +++ LG A KV   KD TTII    +K +I+ARIAQ+KK+L ETDS +D EKL ER+AKL+GGVAVIKVGAATE EL+++K RIEDA +AT AA+EEGIVPGGG AL+     + A+ D K+++ DER+G +IV+++L  P  LIA+NA            + +   GY+A  D++ NM  AG++DP KVTR AL
Sbjct:  280 GFGDRRKAMLQDIAILTGGQFISEETGIKLENVTLDMLGRAEKVRANKDKTTIIGGKGNKKDIEARIAQIKKQLEETDSEFDREKLQERLAKLAGGVAVIKVGAATEVELKEKKHRIEDALSATKAAVEEGIVPGGGVALIRT---IKALDDIKVDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKVKEMDGPMGYDAARDRFVNMFDAGIVDPCKVTRSAL 504          
The following BLAST results are available for this feature:
BLAST of CN186176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_TRIEI1.358e-6654.6360 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH601_SYNJA1.502e-6556.1960 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH602_SYNJB9.735e-6555.3160 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH602_GLOVI6.310e-6456.3960 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH601_GLOVI3.132e-6356.8360 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH602_ANASL1.007e-6155.0760 kDa chaperonin 2 OS=Anabaena sp. (strain L31) G... [more]
CH602_SYNP62.931e-6153.5460 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]
CH60_DICT68.529e-6153.5160 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]
CH60_LACGA1.900e-6055.5160 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
CH60_DICTD3.241e-6053.0760 kDa chaperonin OS=Dictyoglomus turgidum (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186176 ID=CN186176; Name=CN186176; organism=Citrus sinensis; type=EST; length=687bp
AGGTTGGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATT
GTGACTGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAA
CACTTCAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGG
ACTCCACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCT
AGAATTGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGA
CTCAGAGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTTGCTG
TTATTAAAGTTGGAGCTGCCACAGAAACTGAGCTTGAGGACCGTAAACTC
CGTATTGAAGATGCCAAGAATGCAACTTTTGCAGCCATAGAGGAAGGTAT
TGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTG
CTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAGGTGCTGACATT
GTGCAGAAGGCACTGGTAGCACCTGCATCACTGATAGCTCACAATGCTGG
AGTTGAAGGTGAGGTTGTTGTGGAGAAGGTGAAAGATAGTGAATGGACGA
CTGGTTACAATGCAATGACAGACAAGTATGAGAACATGCTTCAGGCTGGA
GTTATTGATCCTGCAAAGGTGACAAGATGTGCATTGC
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