CN186176

Overview
NameCN186176
Unique NameCN186176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH601_PROMM (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL1 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.664e-56
Identity = 119/226 (52.65%), Postives = 156/226 (69.03%), Query Frame = 3
Query:    9 FGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            FG+RRKA L DIA++TG    + D  + +E  S + LG  R++TI KD+TTI+A   ++D + AR+A +K+EL ETDS YD EKL ERIAKL+GGVAVIKVGA TETEL++RKLRIEDA NAT AA+EEGIV GGG  L+HLS  +  + ++L D D+R G +IVQ+AL APA  IA NA                  G+NA++  YE++L+AG++D  KV R AL
Sbjct:  279 FGDRRKAALADIAVLTGGTVISEDRAMTLEKVSQDDLGQVRRITISKDNTTIVAKDENRDAVNARVASIKRELDETDSEYDREKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEGIVAGGGTTLLHLSKGLSKLAEQLND-DQRTGVEIVQRALSAPARQIAINAGENGDVVISEI--QRLNKGFNAISSTYEDLLEAGILDATKVVRLAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_LACZE (60 kDa chaperonin OS=Lactobacillus zeae GN=groL PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.174e-56
Identity = 120/227 (52.86%), Postives = 156/227 (68.72%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA L+DIA +TG    + DLGL +++T +EQLG A KVT+ KD+TTI+  A SKD I  R+  +KK++ +T S +D EKL ER+AKL+GGVAV+KVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV   D +PA+    E+ D + G +IV +AL  P   IA NA              +   GYNA TD++E+M ++G+IDP KVTR AL
Sbjct:  278 GFGDRRKAQLEDIATLTGGTVISSDLGLDLKDTKLEQLGRAGKVTVTKDNTTIVDGAGSKDAIAERVNIIKKQIDDTTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALV---DVLPAVAALKEEGDVQTGINIVLRALEEPVRQIAENAGKEGSVIVEQLKKEKQGVGYNAATDEWEDMAKSGIIDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_LACCB (60 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groL PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.174e-56
Identity = 120/227 (52.86%), Postives = 156/227 (68.72%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA L+DIA +TG    + DLGL +++T +EQLG A KVT+ KD+TTI+  A SKD I  R+  +KK++ +T S +D EKL ER+AKL+GGVAV+KVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV   D +PA+    E+ D + G +IV +AL  P   IA NA              +   GYNA TD++E+M ++G+IDP KVTR AL
Sbjct:  278 GFGDRRKAQLEDIATLTGGTVISSDLGLDLKDTKLEQLGRAGKVTVTKDNTTIVDGAGSKDAIAERVNIIKKQIDDTTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALV---DVLPAVAALKEEGDVQTGINIVLRALEEPVRQIAENAGKEGSVIVEQLKKEKQGVGYNAATDEWEDMAKSGIIDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_LACC3 (60 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groL PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.174e-56
Identity = 120/227 (52.86%), Postives = 156/227 (68.72%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA L+DIA +TG    + DLGL +++T +EQLG A KVT+ KD+TTI+  A SKD I  R+  +KK++ +T S +D EKL ER+AKL+GGVAV+KVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV   D +PA+    E+ D + G +IV +AL  P   IA NA              +   GYNA TD++E+M ++G+IDP KVTR AL
Sbjct:  278 GFGDRRKAQLEDIATLTGGTVISSDLGLDLKDTKLEQLGRAGKVTVTKDNTTIVDGAGSKDAIAERVNIIKKQIDDTTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALV---DVLPAVAALKEEGDVQTGINIVLRALEEPVRQIAENAGKEGSVIVEQLKKEKQGVGYNAATDEWEDMAKSGIIDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_EUBR3 (60 kDa chaperonin OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=groL PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.174e-56
Identity = 111/227 (48.90%), Postives = 161/227 (70.93%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            G+G+RRKA+L+DIAI+TG +  + DLGL +++T+++ LG A+ V ++K++T I+  A  KD I  R++Q++ ++ ET S +D EKL ER+AK++GGVAVI+VGAATETE+++ KLR+EDA NAT AA+EEGI+ GGG+A +H S  V  + D LE  DE+ GA ++ KAL AP   IA NA            +S   TG+NA T++Y +M+  G++DP KVTR AL
Sbjct:  278 GYGDRRKAMLEDIAILTGGQVISSDLGLELKDTTIDMLGRAKSVKVQKENTVIVDGAGDKDAIAGRVSQIRGQIDETTSEFDKEKLQERLAKMAGGVAVIRVGAATETEMKEAKLRMEDALNATRAAVEEGIIAGGGSAYIHASKKVAELVDTLE-GDEKTGAKVILKALEAPLYYIAANAGLEGAVIINKVKESAPGTGFNAATEEYVDMVDNGILDPVKVTRSAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_BACHD (60 kDa chaperonin OS=Bacillus halodurans GN=groL PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.174e-56
Identity = 116/227 (51.10%), Postives = 157/227 (69.16%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG E    DLGL +++ ++ QLG A KV + K++TTI+  A   D+I AR+ Q+K ++ ET S +D EKL ER+AKL+GGVAV+KVGAATETE+++RKLRIEDA N+T AA+EEGIV GGG ALV++   + A+     + DE  G +IV +AL  P   IAHNA              E   G+NA T ++ NM++AG++DP KVTR AL
Sbjct:  278 GFGDRRKAMLEDIAILTGGEVITEDLGLDLKSANITQLGRASKVVVTKENTTIVEGAGESDKIAARVNQIKAQIEETTSDFDKEKLQERLAKLAGGVAVLKVGAATETEMKERKLRIEDALNSTRAAVEEGIVAGGGTALVNV---IKAVSSIGAEGDEATGVNIVLRALEEPVRQIAHNAGLEGSVIVERLKKEEAGFGFNAATGEWVNMVEAGIVDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.839e-56
Identity = 108/229 (47.16%), Postives = 158/229 (69.00%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDS--EWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFGERR + L+DIAI+TG      ++G+ +E  +   LGTA K+TI K+ TT++ D ++  ++ AR+ Q++    +TD  Y+ EKL ERIA+LSGGVA+I+VGA TETEL+++KLR+EDA NAT AA+EEG+VPGGG  L+ LS+ V  IK ++ D ++++GADI+++AL  P  LIA NA             +      GYNA TD +EN+++ G+IDP+KV RC++
Sbjct:  164 GFGERRSSYLEDIAILTGGTVVGDEMGVSLEQATDAVLGTAAKITITKERTTVVGDGSTAADVAARVKQIRNLQMQTDQDYEREKLQERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATRAAVEEGVVPGGGCTLLRLSEKVDVIKRRMTDPEQQMGADIIKRALCYPIKLIAQNAGVNGSVVMNEVMKNLDRPHYGYNAATDSFENLMETGIIDPSKVVRCSM 392          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_LACSS (60 kDa chaperonin OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=groL PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.839e-56
Identity = 118/227 (51.98%), Postives = 153/227 (67.40%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRK  L+DIA +TGA     DLGL ++ T+++QLGTA KVT+ KD TTI+  A SK  I  R+  +KK++AET S +D EKL ER+AKL+GGVAVIKVGAATETEL+++K RIEDA NAT AA+EEG V GGG AL+ + + V A++   E+ D + G +IV +AL  P   IA NA                  GYNA    +ENM++AG++DP KVTR AL
Sbjct:  278 GFGDRRKEQLEDIATLTGATVITSDLGLELKETTIDQLGTAGKVTVTKDDTTIVEGAGSKSAIAERVENIKKQIAETTSDFDREKLQERLAKLAGGVAVIKVGAATETELKEQKYRIEDALNATRAAVEEGYVAGGGTALIDVIESVAALE---EEGDVQTGINIVLRALEEPVRQIATNAGLEGSVIVEKVKSQPVEVGYNAANGNWENMIEAGILDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_GALSU (60 kDa chaperonin, chloroplastic OS=Galdieria sulphuraria GN=groL PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.839e-56
Identity = 114/227 (50.22%), Postives = 161/227 (70.93%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRK++L+DIAI+TG +    D GL ++   +  LG A KV + K+STTII++A +++ ++AR  Q++K++  TDS Y+ EKL ER+AKL+GG+AVIKVGAATETE++D+KLR+EDA NAT AAIEEGIVPGGGA LVHL++ +      +   DE +GA IV+K++ AP   I  N             + +++ GY+A T K+ NM ++G+IDPAKVTR AL
Sbjct:  280 GFGDRRKSILEDIAILTGGQLITEDAGLSLDKVDLSMLGQANKVIVNKESTTIISNA-NENNVKARCEQIRKQIEITDSSYEKEKLQERLAKLAGGIAVIKVGAATETEMKDKKLRLEDAINATKAAIEEGIVPGGGATLVHLANDLFNWAKGVLKEDELIGALIVEKSITAPLKRIVQNEGKNGAIVVDEIKNLDFSIGYDASTSKFVNMYESGIIDPAKVTRSAL 505          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_BACSK (60 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groL PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.839e-56
Identity = 116/227 (51.10%), Postives = 155/227 (68.28%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG +    DLGL +++ ++E LG A KV + K++TTI+  A   ++I  R+ QLK ++ ET S +D EKL ER+AKL+GGVAV+KVGAATETE+++RKLRIEDA N+T AA+EEGIV GGG ALV++   + A+K      DE  G +IV +AL  P   IAHNA              E   GYNA T +Y NM++ G++DP KVTR AL
Sbjct:  278 GFGDRRKAMLEDIAILTGGQVITEDLGLDLKSATIESLGRAAKVVVTKENTTIVEGAGDPEQISGRVNQLKAQVEETTSEFDKEKLQERLAKLAGGVAVLKVGAATETEMKERKLRIEDALNSTRAAVEEGIVAGGGTALVNV---IKAVKAVDATGDEATGVNIVLRALEEPVRQIAHNAGLEGSIIVEKLKAEEVGVGYNAATGEYVNMVETGILDPVKVTRSAL 501          
The following BLAST results are available for this feature:
BLAST of CN186176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_PROMM1.664e-5652.6560 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_LACZE2.174e-5652.8660 kDa chaperonin OS=Lactobacillus zeae GN=groL PE... [more]
CH60_LACCB2.174e-5652.8660 kDa chaperonin OS=Lactobacillus casei (strain B... [more]
CH60_LACC32.174e-5652.8660 kDa chaperonin OS=Lactobacillus casei (strain A... [more]
CH60_EUBR32.174e-5648.9060 kDa chaperonin OS=Eubacterium rectale (strain A... [more]
CH60_BACHD2.174e-5651.1060 kDa chaperonin OS=Bacillus halodurans GN=groL P... [more]
RUBB_CHLRE2.839e-5647.16RuBisCO large subunit-binding protein subunit beta... [more]
CH60_LACSS2.839e-5651.9860 kDa chaperonin OS=Lactobacillus sakei subsp. sa... [more]
CH60_GALSU2.839e-5650.2260 kDa chaperonin, chloroplastic OS=Galdieria sulp... [more]
CH60_BACSK2.839e-5651.1060 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186176 ID=CN186176; Name=CN186176; organism=Citrus sinensis; type=EST; length=687bp
AGGTTGGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATT
GTGACTGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAA
CACTTCAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGG
ACTCCACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCT
AGAATTGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGA
CTCAGAGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTTGCTG
TTATTAAAGTTGGAGCTGCCACAGAAACTGAGCTTGAGGACCGTAAACTC
CGTATTGAAGATGCCAAGAATGCAACTTTTGCAGCCATAGAGGAAGGTAT
TGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTG
CTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAGGTGCTGACATT
GTGCAGAAGGCACTGGTAGCACCTGCATCACTGATAGCTCACAATGCTGG
AGTTGAAGGTGAGGTTGTTGTGGAGAAGGTGAAAGATAGTGAATGGACGA
CTGGTTACAATGCAATGACAGACAAGTATGAGAACATGCTTCAGGCTGGA
GTTATTGATCCTGCAAAGGTGACAAGATGTGCATTGC
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