CN186176

Overview
NameCN186176
Unique NameCN186176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_SYNAS (60 kDa chaperonin 2 OS=Syntrophus aciditrophicus (strain SB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.839e-56
Identity = 115/227 (50.66%), Postives = 157/227 (69.16%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG    + D+G  +ENT +E LG A+++ I KD+TTII  A  +  ++ R+ Q++ ++ ET S YD EKL ER+AKL GGVAVIKVGAATETE++++K R+EDA NAT AA+EEGIVPGGG A +     + A+K    + DE++G +IV+KAL  P  +IA NA            +     G+NA T+ YE+M++AGVIDP KVTR AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGTVISEDMGYKLENTRLEDLGRAKRIQIDKDNTTIIDGAGERAALEGRVKQIRAQIDETTSDYDREKLQERLAKLVGGVAVIKVGAATETEMKEKKARVEDALNATRAAVEEGIVPGGGVAYIRTLPILEALK---LEGDEQVGVNIVRKALEEPLKMIAANAGMEGTIVVEKVKEQSGAFGFNARTEVYEDMIEAGVIDPTKVTRFAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_STAAU (60 kDa chaperonin OS=Staphylococcus aureus GN=groL PE=1 SV=3)

HSP 1 Score: 218.009 bits (554), Expect = 3.708e-56
Identity = 115/227 (50.66%), Postives = 159/227 (70.04%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+D+AI+TGA+    DLGL +++ S++ LGTA KV + KD+TT++     ++ I AR++QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V    +   + D   G +IV KAL AP   IA NA            ++E   G+N  T+++ NML+ G++DP KVTR AL
Sbjct:  279 GFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKV---SENEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNGATNEWVNMLRRGIVDPTKVTRSAL 502          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_LACPL (60 kDa chaperonin OS=Lactobacillus plantarum GN=groL PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.708e-56
Identity = 115/227 (50.66%), Postives = 157/227 (69.16%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRK  LQDIAI+TG      DLGL +++T+++QLG A KVT+ KD+TTI+  A SKD I  R+  ++ ++ ET S +D EKL ER+AKL+GGVAV++VGAATETEL++RK RIEDA NAT AA+EEG V GGG AL+++   V A+K   E  D + G +IV++AL  P   IA NA            + +   G+NA TD++ +M++AG++DP KVTR AL
Sbjct:  278 GFGDRRKEQLQDIAILTGGTVITDDLGLELKDTTIDQLGQANKVTVTKDNTTIVEGAGSKDAISERVEFIRNQIGETTSDFDKEKLQERLAKLAGGVAVVRVGAATETELKERKYRIEDALNATRAAVEEGFVAGGGTALINVIKDVAALK---ETGDVQTGINIVKRALEEPVRQIAENAGLEGSVIVEKMKEQKPGVGFNAATDEWVDMIKAGIVDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_ALKMQ (60 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groL PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.708e-56
Identity = 116/229 (50.66%), Postives = 162/229 (70.74%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE--DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRK++L DIA++TGA   + +LG  ++  +V+ LGTAR V + K++TTI+  A ++  I+ R++Q+KK++ ET S +D EKL ER+AKLSGGVAVI+VGAATETEL++RKLRIEDA NAT AA+EEGIV GGG ALV++   +PA++  LE    DE+ G  I+++AL  P   IA NA             S+   GY+ + +KY NM++AG++DP KVTR AL
Sbjct:  278 GFGDRRKSMLDDIAVLTGATVISEELGYDLKTATVDMLGTARTVKVDKENTTIVEGAGNQQLIKDRVSQIKKQIEETTSDFDKEKLQERLAKLSGGVAVIQVGAATETELKERKLRIEDALNATRAAVEEGIVAGGGTALVNV---IPAVEALLEGSQGDEKTGIQIIRRALEEPLRQIAENAGLEGSVIVNKVMSSDKGIGYDVLNNKYVNMIEAGIVDPTKVTRSAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_STAHJ (60 kDa chaperonin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=groL PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.843e-56
Identity = 115/227 (50.66%), Postives = 159/227 (70.04%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+D+AI+TGA     DLGL +++ S++ LG+A KV + KD+TT++      + I AR++Q+K ++ ETDS +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++ + V  I+    + D   G +IV KAL AP   IA NA             ++   G+NA T+++ NML+ G++DP KVTR AL
Sbjct:  278 GFGDRRKAMLEDLAILTGATVITDDLGLELKDASIDMLGSANKVEVTKDNTTVVDGDGDDNSIDARVSQIKAQIEETDSDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYNKVDEIE---AEGDVATGVNIVLKALSAPVRQIAENAGLEGSVIVERLKHADAGVGFNAATNEWVNMLEEGIVDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.843e-56
Identity = 116/227 (51.10%), Postives = 158/227 (69.60%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFGERRKA+LQDIA++TG +  + D+G+ +EN SV  LGTA++V I K++TTI+  A   D+I+AR+ Q++ ++ ET S YD EKL ER+AKL GGVAVI VGAATETE++++K R+EDA NAT AA+EEGIVPGGG ALV ++  +  IK    D DE  G +I+++A+  P   IA NA            + +   G+NA T +YE+++  GVIDP KVTR AL
Sbjct:  280 GFGERRKAMLQDIAVLTGGQVVSEDMGIKLENISVADLGTAKRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKP--ADDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKDGFGFNAATGEYEDLIGVGVIDPKKVTRIAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.843e-56
Identity = 116/227 (51.10%), Postives = 158/227 (69.60%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFGERRKA+LQDIA++TG +  + D+G+ +EN SV  LGTA++V I K++TTI+  A   D+I+AR+ Q++ ++ ET S YD EKL ER+AKL GGVAVI VGAATETE++++K R+EDA NAT AA+EEGIVPGGG ALV ++  +  IK    D DE  G +I+++A+  P   IA NA            + +   G+NA T +YE+++  GVIDP KVTR AL
Sbjct:  280 GFGERRKAMLQDIAVLTGGQVVSEDMGIKLENISVADLGTAKRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKP--ADDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKDGFGFNAATGEYEDLIGVGVIDPKKVTRIAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_PROMT (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL2A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.843e-56
Identity = 121/226 (53.54%), Postives = 154/226 (68.14%), Query Frame = 3
Query:    9 FGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            FGERRKA L DIA++TG    + D  + +E   +  LG AR+VTI KDSTTI+A+ A   E+  RIA +K+EL ETDS YD EKL ERIAKL+GGVAVIKVGA TETEL++RKLRIEDA NAT AAIEEGIV GGG  L+ LS+ +  +  KLE  D++ G +I+++AL AP   IA NA                  G+NA T +YE++L+AG++D +KV R AL
Sbjct:  279 FGERRKAALGDIAVLTGGTLISEDKAMSLEKVQISDLGQARRVTITKDSTTIVANEAQNTELSNRIASIKRELEETDSEYDQEKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEGIVAGGGTTLLELSEGLGDLAKKLE-GDQKTGVEIIKRALTAPTKQIAINAGFNGDVVVSDI--KRLGKGFNAQTGEYEDLLEAGILDASKVIRLAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_CHLMU (60 kDa chaperonin OS=Chlamydia muridarum GN=groL PE=2 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 6.325e-56
Identity = 111/227 (48.90%), Postives = 155/227 (68.28%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG +  + +LG+ +EN S+  LG A+KV + K+ TTI+     K+ + AR   +KK++ ++ S YD EKL ER+AKLSGGVAVI+VGAATE E++++K R++DA++AT AA+EEGI+PGGG AL+     + A    L + DER+GA IV KAL AP   IA NA                  GY+A+ D Y +M++AG++DPAKVTR AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGQLISEELGMKLENASLAMLGKAKKVIVSKEDTTIVEGMGEKEALDARCESIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDERIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANEGYDALRDAYTDMIEAGILDPAKVTRSAL 506          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH601_STRCO (60 kDa chaperonin 1 OS=Streptomyces coelicolor GN=groL1 PE=3 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 6.325e-56
Identity = 117/228 (51.32%), Postives = 158/228 (69.30%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKL-EDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQD+A++TGA   + ++GL ++   +E LGTAR++T+ KD TTI+  A  +DE+Q RIAQ+K E+  TDS +D EKL ER+AKL+GGV VIKVGAATE EL++RK R+EDA +AT AA+EEGIV GGG+ALVH    V  ++  L +  DE  G  +V++A V P   IA NA            D +   G+NA T +Y ++++AGVIDP KVTR AL
Sbjct:  280 GFGDRRKAMLQDMAVLTGATVISEEVGLKLDQVGLEVLGTARRITVTKDDTTIVDGAGKRDEVQGRIAQIKAEIENTDSDWDREKLQERLAKLAGGVCVIKVGAATEVELKERKHRLEDAISATRAAVEEGIVSGGGSALVHA---VKVLEGNLGKTGDEATGVAVVRRAAVEPLRWIAENAGLEGYVITSKVADLDKGQGFNAATGEYGDLVKAGVIDPVKVTRSAL 504          
The following BLAST results are available for this feature:
BLAST of CN186176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNAS2.839e-5650.6660 kDa chaperonin 2 OS=Syntrophus aciditrophicus (... [more]
CH60_STAAU3.708e-5650.6660 kDa chaperonin OS=Staphylococcus aureus GN=groL... [more]
CH60_LACPL3.708e-5650.6660 kDa chaperonin OS=Lactobacillus plantarum GN=gr... [more]
CH60_ALKMQ3.708e-5650.6660 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH60_STAHJ4.843e-5650.6660 kDa chaperonin OS=Staphylococcus haemolyticus (... [more]
CH60_DESVV4.843e-5651.1060 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH60_DESVH4.843e-5651.1060 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH602_PROMT4.843e-5653.5460 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH60_CHLMU6.325e-5648.9060 kDa chaperonin OS=Chlamydia muridarum GN=groL P... [more]
CH601_STRCO6.325e-5651.3260 kDa chaperonin 1 OS=Streptomyces coelicolor GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186176 ID=CN186176; Name=CN186176; organism=Citrus sinensis; type=EST; length=687bp
AGGTTGGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATT
GTGACTGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAA
CACTTCAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGG
ACTCCACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCT
AGAATTGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGA
CTCAGAGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTTGCTG
TTATTAAAGTTGGAGCTGCCACAGAAACTGAGCTTGAGGACCGTAAACTC
CGTATTGAAGATGCCAAGAATGCAACTTTTGCAGCCATAGAGGAAGGTAT
TGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTG
CTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAGGTGCTGACATT
GTGCAGAAGGCACTGGTAGCACCTGCATCACTGATAGCTCACAATGCTGG
AGTTGAAGGTGAGGTTGTTGTGGAGAAGGTGAAAGATAGTGAATGGACGA
CTGGTTACAATGCAATGACAGACAAGTATGAGAACATGCTTCAGGCTGGA
GTTATTGATCCTGCAAAGGTGACAAGATGTGCATTGC
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