CN186176

Overview
NameCN186176
Unique NameCN186176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_LISMF (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groL PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 114/227 (50.22%), Postives = 153/227 (67.40%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG +    DLGL ++  +V+QLGTA KV + KD TTI+  A    +I AR+ Q++ ++ ET S +D EKL ER+AKL+GGVAV+KVGAATETEL++RKLRIEDA N+T AA+EEGIV GGG ALV + + V A++    + D   G +IV ++L  P   IAHNA                  G+NA   ++ NM+ AG++DP KVTR AL
Sbjct:  278 GFGDRRKAMLEDIAILTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGAGDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGVAVVKVGAATETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVSIYNKVAALE---AEGDVETGINIVLRSLEEPVRQIAHNAGLEGSVIVERLKHEAVGVGFNAANGEWVNMIDAGIVDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_LISMC (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groL PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 114/227 (50.22%), Postives = 153/227 (67.40%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG +    DLGL ++  +V+QLGTA KV + KD TTI+  A    +I AR+ Q++ ++ ET S +D EKL ER+AKL+GGVAV+KVGAATETEL++RKLRIEDA N+T AA+EEGIV GGG ALV + + V A++    + D   G +IV ++L  P   IAHNA                  G+NA   ++ NM+ AG++DP KVTR AL
Sbjct:  278 GFGDRRKAMLEDIAILTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGAGDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGVAVVKVGAATETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVSIYNKVAALE---AEGDVETGINIVLRSLEEPVRQIAHNAGLEGSVIVERLKHEAVGVGFNAANGEWVNMIDAGIVDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_DINSH (60 kDa chaperonin OS=Dinoroseobacter shibae (strain DFL 12) GN=groL PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 116/230 (50.43%), Postives = 163/230 (70.87%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDA--DERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXD-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQDIAI+TG +  + DLG+ +E+ +++ LG+A++V+I KD TTI+  A +K EI+AR+AQ++ ++ ET S YD EKL ER+AKL+GGVAVI+VG  TE E+++RK R++DA NAT AA++EGIV GGG AL+  + H+    D LE A  D+ +G +IV+KAL AP   IA NA            + S+   G+NA T++Y +M + GVIDPAKV R AL
Sbjct:  280 GFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTIDMLGSAKRVSITKDETTIVDGAGAKAEIEARVAQIRNQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQAAKHL----DGLEGANNDQNIGINIVRKALEAPLRQIAENAGVDGSVVAGKIRESSDLAFGFNAQTEEYGDMFKFGVIDPAKVVRTAL 505          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_DESHY (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groL PE=3 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 114/227 (50.22%), Postives = 157/227 (69.16%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG      DLGL +ENT+++ LG AR++ + K+ TTI+  + S+D+I++R+  +KK++ ET S +D EKL ER+AKL+GGVAVI+VGAATE E++++KLRIEDA  AT AA+EEGIV GGG ALV   D   A+       DE+ G  IV +AL  P   IA+NA            +     G+NA+T+ YE+M+ AG++DPAKVTR AL
Sbjct:  278 GFGDRRKAMLEDIAILTGGTVITEDLGLKLENTTIDMLGRARQIRVTKEETTIVEGSGSQDDIKSRVEAIKKQIDETTSDFDREKLQERLAKLAGGVAVIQVGAATEVEMKEKKLRIEDALAATRAAVEEGIVAGGGCALV---DAAKALDSLKLTGDEKTGVAIVYRALEEPLRQIANNAGFEGSIVVEKVRNGGRGVGFNALTEAYEDMIAAGIVDPAKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_CHLPN (60 kDa chaperonin OS=Chlamydia pneumoniae GN=groL PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 110/227 (48.46%), Postives = 154/227 (67.84%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG +  + +LG+ +ENT++  LG A+KV + K+ TTI+    +K +IQAR   +KK++ ++ S YD EKL ER+AKLSGGVAVI+VGAATE E++++K R++DA++AT AA+EEGI+PGGG ALV     + A    L + DE +G  I+ KAL AP   IA NA                  GY+A+ D Y +M+ AG++DP KVTR AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGQLVSEELGMKLENTTLAMLGKAKKVIVTKEDTTIVEGLGNKPDIQARCDNIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALVRCIPTLEAFLPMLANEDEAIGTRIILKALTAPLKQIASNAGKEGAIICQQVLARSANEGYDALRDAYTDMIDAGILDPTKVTRSAL 506          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_BACP2 (60 kDa chaperonin OS=Bacillus pumilus (strain SAFR-032) GN=groL PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 113/227 (49.78%), Postives = 158/227 (69.60%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DI+++TG E    DLGL +++T + QLG A KV + K++TTI+  +    +I AR+ Q++ ++ ET S +D EKL ER+AKL+GGVAVIKVGAATETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V +I+    D D + G +IV ++L  P   IAHNA            + E   G+NA T+++ NM++ G++DP KVTR AL
Sbjct:  278 GFGDRRKAMLEDISVLTGGELITEDLGLDLKSTEIGQLGRASKVVVTKENTTIVEGSGDSAQIAARVNQIRAQVEETTSEFDKEKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVSGGGTALVNVYKKVASIE---ADGDVQTGVNIVLRSLEEPIRQIAHNAGLEGSVIVERLKNEEIGVGFNAATNEWVNMIEKGIVDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_BACA2 (60 kDa chaperonin OS=Bacillus amyloliquefaciens (strain FZB42) GN=groL PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 113/227 (49.78%), Postives = 159/227 (70.04%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DI+++TG E    DLGL +++T + QLG A KV + K++TTI+  A   ++I AR+ Q++ ++ ET S +D EKL ER+AKL+GGVAVIKVGAATETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++ + V A++    + D + G +IV +AL  P   IAHNA            + +   G+NA T ++ NM++ G++DP KVTR AL
Sbjct:  278 GFGDRRKAMLEDISVLTGGEVITEDLGLDLKSTEIGQLGRASKVVVTKENTTIVEGAGDTEKIAARVNQIRAQVEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVSGGGTALVNVYNKVAAVE---AEGDAQTGINIVLRALEEPIRQIAHNAGLEGSVIVERLKNEKIGVGFNAATGEWVNMIEKGIVDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_AKKM8 (60 kDa chaperonin OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=groL PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 112/228 (49.12%), Postives = 156/228 (68.42%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+++DIAI+TG +    DLG+ +EN  +E LG A++V + KD T I+  +A   +I+ARI+Q+++++ +T S YD EKL ER+AKL+GGVAVI VGAATETE++++K R++DA +AT AA+EEGIVPGGG AL+     +  +K    + DE  GA IV +A+ AP   +A NA              + T  GYN  TDKYE++L AGV+DP KVTR AL
Sbjct:  279 GFGDRRKAMMEDIAILTGGKCITEDLGIKLENVGIEDLGQAKRVVVSKDETVIVEGSAKSSDIEARISQIRRQIKDTTSDYDREKLQERLAKLAGGVAVIHVGAATETEMKEKKARVDDALHATRAAVEEGIVPGGGVALIRAQKAIDTLK---LEGDEATGAQIVYRAVEAPLRQLACNAGREGALIVANVKGMKNTAEGYNVATDKYEDLLSAGVVDPTKVTRSAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH603_RHILO (60 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 113/228 (49.56%), Postives = 161/228 (70.61%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG +  + DLG+ +EN  ++ LG A+KV+I K++TTI+  A  K+EIQ R+AQ+K+++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E++++K R++DA NAT AA+EEGIVPGGG AL+  S  + A+     ++D+  G  IV++AL APA  IA NA            +++  T G+NA T +Y +M+  G++DP KV R AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGQVISEDLGIKLENVGLDMLGRAKKVSISKENTTIVDGAGKKEEIQGRVAQIKQQIEETTSDYDKEKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVPGGGVALLRASLSINAVG---ANSDQTAGISIVRRALQAPARQIAANAGAEASIVAGKILENKGATFGFNAQTGEYGDMIAMGIVDPVKVVRTAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_THEFY (60 kDa chaperonin 2 OS=Thermobifida fusca (strain YX) GN=groL2 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 115/227 (50.66%), Postives = 157/227 (69.16%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFGERRKA+LQDIAI+TG +  A ++GL +EN  ++ LG AR++T+ KD+TTI+  A  + E+  RI Q++KE+  TDS +D EKL ER+AKL+GGV V++VGAATE EL++RK R+EDA +AT AA+EEGI+ GGG+ALVH +  +    D     DE  G  IV++ALVAPA  IA+NA            + E   GYNA T +Y +++  G+IDP KVTR A+
Sbjct:  278 GFGERRKAMLQDIAILTGGQVIAEEVGLTLENAELDVLGKARRITVTKDTTTIVDGAGDQSEVNDRINQIRKEIEATDSDWDREKLQERLAKLAGGVCVLRVGAATEVELKERKHRLEDAISATRAAVEEGIIAGGGSALVHAAKTLEG--DLGRTGDEATGVAIVRRALVAPARWIANNAGAEGNVVVSRIAELEPGHGYNAATGEYGDLVAQGIIDPVKVTRSAV 502          
The following BLAST results are available for this feature:
BLAST of CN186176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LISMF2.403e-5550.2260 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISMC2.403e-5550.2260 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_DINSH2.403e-5550.4360 kDa chaperonin OS=Dinoroseobacter shibae (strai... [more]
CH60_DESHY2.403e-5550.2260 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH60_CHLPN2.403e-5548.4660 kDa chaperonin OS=Chlamydia pneumoniae GN=groL ... [more]
CH60_BACP22.403e-5549.7860 kDa chaperonin OS=Bacillus pumilus (strain SAFR... [more]
CH60_BACA22.403e-5549.7860 kDa chaperonin OS=Bacillus amyloliquefaciens (s... [more]
CH60_AKKM82.403e-5549.1260 kDa chaperonin OS=Akkermansia muciniphila (stra... [more]
CH603_RHILO2.403e-5549.5660 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=... [more]
CH602_THEFY2.403e-5550.6660 kDa chaperonin 2 OS=Thermobifida fusca (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186176 ID=CN186176; Name=CN186176; organism=Citrus sinensis; type=EST; length=687bp
AGGTTGGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATT
GTGACTGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAA
CACTTCAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGG
ACTCCACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCT
AGAATTGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGA
CTCAGAGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTTGCTG
TTATTAAAGTTGGAGCTGCCACAGAAACTGAGCTTGAGGACCGTAAACTC
CGTATTGAAGATGCCAAGAATGCAACTTTTGCAGCCATAGAGGAAGGTAT
TGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTG
CTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAGGTGCTGACATT
GTGCAGAAGGCACTGGTAGCACCTGCATCACTGATAGCTCACAATGCTGG
AGTTGAAGGTGAGGTTGTTGTGGAGAAGGTGAAAGATAGTGAATGGACGA
CTGGTTACAATGCAATGACAGACAAGTATGAGAACATGCTTCAGGCTGGA
GTTATTGATCCTGCAAAGGTGACAAGATGTGCATTGC
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