CN186176

Overview
NameCN186176
Unique NameCN186176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:211..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH601_SYNJB (60 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.241e-60
Identity = 121/227 (53.30%), Postives = 160/227 (70.48%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG E  + + GL +EN  ++  GTAR+VT+ KD+TTI+A+  ++  ++AR  Q+++++ ETDS YD EKL ER+AKLSGGVAVIKVGAATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L HL   V          DE +GA++V +AL AP   IA NA            D  + TGY+A  D + +M +AG++DPAKVTR AL
Sbjct:  279 GFGDRRKAMLEDIAILTGGEVISEERGLKLENARLDSFGTARRVTVTKDNTTIVAEG-NEAAVKARCEQIRRQIEETDSTYDKEKLQERLAKLSGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLIPVVTEWAQANLSGDELVGANLVARALGAPLRRIAENAGQNGSIVLERVKDKPFNTGYDAQNDAFVDMFEAGIVDPAKVTRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.233e-60
Identity = 116/227 (51.10%), Postives = 164/227 (72.25%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIA++TG +    D GL +EN  ++ LG AR++TI KD+TTI+A+   K E++AR  Q+++++ ETDS YD EKL ER+AKL+GGVAV+KVGAATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L HL+  +    ++   ++E  G+ IV +AL+AP   IA NA            + ++ TG+NA  +++ +M +AG++DPAKVTR AL
Sbjct:  279 GFGDRRKAMLEDIAVLTGGQVITEDAGLKLENAKLDMLGKARRITITKDNTTIVAEGNEK-EVKARCEQIRRQMDETDSSYDKEKLQERLAKLAGGVAVVKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPELETWANENLQSEELTGSLIVSRALLAPLKRIAENAGQNGAVIGERVKEKDFNTGFNAANNEFVDMFEAGIVDPAKVTRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.528e-60
Identity = 122/226 (53.98%), Postives = 159/226 (70.35%), Query Frame = 3
Query:    9 FGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            FGERRKA+LQDIAI+TG +  + ++GL +E+  +  LG A  VT+ KD+T ++++  +K +IQ R+ QLK++LAETDS YD EKL ERIAKL GGVAVIKVGAATETEL+DRKLR+EDA NAT AA+ EGIVPGGG  L+HL+  + A+   L   +E+ GA IV  AL AP + IA NA              ++  G+NA T  YE+++ AG+IDPAKV R AL
Sbjct:  279 FGERRKAMLQDIAILTGGQVISEEVGLTLEDVELTMLGEASSVTVTKDTTILVSEKGNKADIQKRVEQLKQQLAETDSEYDKEKLQERIAKLVGGVAVIKVGAATETELKDRKLRLEDALNATKAAVAEGIVPGGGVTLLHLASRIDALLPSL-SPEEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGDFNYGFNAATGAYEDLVSAGIIDPAKVVRSAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.528e-60
Identity = 122/226 (53.98%), Postives = 159/226 (70.35%), Query Frame = 3
Query:    9 FGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            FGERRKA+LQDIAI+TG +  + ++GL +E+  +  LG A  VT+ KD+T ++++  +K +IQ R+ QLK++LAETDS YD EKL ERIAKL GGVAVIKVGAATETEL+DRKLR+EDA NAT AA+ EGIVPGGG  L+HL+  + A+   L   +E+ GA IV  AL AP + IA NA              ++  G+NA T  YE+++ AG+IDPAKV R AL
Sbjct:  279 FGERRKAMLQDIAILTGGQVISEEVGLTLEDVELTMLGEASSVTVTKDTTILVSEKGNKADIQKRVEQLKQQLAETDSEYDKEKLQERIAKLVGGVAVIKVGAATETELKDRKLRLEDALNATKAAVAEGIVPGGGVTLLHLASRIDALLPSL-SPEEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGDFNYGFNAATGAYEDLVSAGIIDPAKVVRSAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_LACS1 (60 kDa chaperonin OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=groL PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.220e-60
Identity = 122/227 (53.74%), Postives = 165/227 (72.69%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQDIA +TGA     DLGL +++T+VEQLG+A KVT+ K++TTI+  A  KD+I  R+ Q+KK+++ET S +D EKL ER+AKLSGGVAVIKVGAATETEL++RK RIEDA NAT AA+EEG VPGGG ALV++   V A++   E+ D + G +IV++AL  P   IA NA            + +   G+NA T+++ +M++AG++DP KVTR AL
Sbjct:  278 GFGDRRKAMLQDIATLTGATVITDDLGLQLKDTTVEQLGSAGKVTVTKENTTIVEGAGDKDKIAERVEQIKKQISETTSDFDREKLQERLAKLSGGVAVIKVGAATETELKERKYRIEDALNATRAAVEEGFVPGGGTALVNVIGKVAALE---EEGDVQTGINIVKRALEEPVRQIAENAGLEGSVIVEKLKEQKPGVGFNAATNEWVDMVEAGIVDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_PROMA (60 kDa chaperonin 2 OS=Prochlorococcus marinus GN=groL2 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.430e-60
Identity = 118/227 (51.98%), Postives = 159/227 (70.04%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+D+A++T  +    D GL +EN +++ LGT+R+VTI KD+TTI+A+  ++  +QAR  Q+KK++ ETDS YD EKL ER+AKL+GGVAV+KVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  V +        +E +GA+IV+ AL AP   IA NA                  GYNA + +Y +ML AG++DPAKVTR  L
Sbjct:  279 GFGDRRKAMLEDMAVLTNGQLITEDAGLKLENATLDMLGTSRRVTINKDTTTIVAEG-NEAAVQARCEQIKKQMDETDSTYDKEKLQERLAKLAGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLASEVHSWAASSLSGEELIGANIVEAALTAPLMRIAENAGANGAVIAEHVKSKPLNDGYNAASGEYVDMLSAGIVDPAKVTRSGL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_THEEB (60 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groL PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.608e-59
Identity = 119/227 (52.42%), Postives = 159/227 (70.04%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIA++T  +    D GL +EN  ++ LG AR++TI KD TTI+A+   K  ++AR  Q+++++ ETDS YD EKL ER+AKL+GGVAVIKVGAATETE++DRKLR+EDA NAT AA+EEGIVPGGG  LVHL+  +     +    +E +GA+IV++AL AP   IA NA            +  +  GY+A  D+Y NM  AG++DPAKVTR AL
Sbjct:  279 GFGDRRKAMLEDIAVLTAGQVITEDAGLKLENAKLDMLGKARRITITKDHTTIVAEGNEK-AVKARCEQIRRQIEETDSSYDKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLVHLAPELSNWAAEHLTGEELIGANIVERALSAPLRRIAENAGQNGAIIVERVKEKPFDVGYDAAKDEYVNMFDAGIVDPAKVTRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_LACJO (60 kDa chaperonin OS=Lactobacillus johnsonii GN=groL PE=3 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.608e-59
Identity = 126/228 (55.26%), Postives = 160/228 (70.18%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVP-AIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG    + DLGL +++T ++QLG A KVT+ KDSTTI+  A SK+ I  R+ Q+KK++A+T S +D EKL ER+AKL+GGVAVIKVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV +   +   +K   EDA+   G  IV KAL AP   IA NA              +   GYNA T+K+ENM++AG+IDP KVTR AL
Sbjct:  278 GFGDRRKAMLEDIAILTGGTVISSDLGLELKDTKIDQLGKAGKVTVTKDSTTIVEGAGSKEAIAERVDQIKKQIADTTSDFDREKLQERLAKLAGGVAVIKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDVMKSIQGTVKGDSEDAE--TGVKIVMKALGAPVRQIAENAGKDGAVILDHLEHEDPEVGYNAATNKWENMVKAGIIDPTKVTRSAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_SYNJA (60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL2 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.744e-59
Identity = 120/227 (52.86%), Postives = 158/227 (69.60%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG E  + + GL +EN  ++  G+AR+VT+ KD TTI+A+  ++  ++AR  Q+++++ ETDS YD EKL ER+AKLSGGVAVIKVGAATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L HL   V          DE +GA +V +AL AP   IA NA            +  +T GY+A  D Y +M +AG++DPAKVTR AL
Sbjct:  279 GFGDRRKAMLEDIAILTGGEVISEERGLKLENARLDSFGSARRVTVTKDHTTIVAEG-NEAAVKARCEQIRRQIEETDSTYDKEKLQERLAKLSGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLMPAVTEWAQANLSGDELVGAMLVARALGAPLRRIAENAGQNGSIVLERVKEKPFTVGYDAQNDAYVDMFEAGIVDPAKVTRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH601_THEVL (60 kDa chaperonin 1 OS=Thermosynechococcus vulcanus GN=groL1 PE=3 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.744e-59
Identity = 119/227 (52.42%), Postives = 159/227 (70.04%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+R KA+L+DIA++T  +  A D GL +EN  ++ LG AR++TI KD TTI+A+   K  ++AR  Q+++++ ETDS YD EKL ER+AKL+GGVAVIKVGAATETE++DRKLR+EDA NAT AA+EEGIVPGGG  LVHL+  +     +    +E +GA+IV++AL AP   IA NA            +  +  GY+A  D+Y NM  AG++DPAKVTR AL
Sbjct:  279 GFGDRSKAMLEDIAVLTAGQVIAEDAGLKLENAKLDMLGKARRITITKDHTTIVAEGNEK-AVKARCEQIRRQIEETDSSYDKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLVHLAPELSNWAAEHLTGEELIGANIVERALSAPLRRIAENAGQNGAIIVERVKEKPFDVGYDAAKDEYVNMFDAGIVDPAKVTRSAL 504          
The following BLAST results are available for this feature:
BLAST of CN186176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_SYNJB3.241e-6053.3060 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 ... [more]
CH602_TRIEI4.233e-6051.1060 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH602_THEVL5.528e-6053.9860 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB5.528e-6053.9860 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH60_LACS17.220e-6053.7460 kDa chaperonin OS=Lactobacillus salivarius subs... [more]
CH602_PROMA9.430e-6051.9860 kDa chaperonin 2 OS=Prochlorococcus marinus GN=... [more]
CH60_THEEB1.608e-5952.4260 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH60_LACJO1.608e-5955.2660 kDa chaperonin OS=Lactobacillus johnsonii GN=gr... [more]
CH602_SYNJA2.744e-5952.8660 kDa chaperonin 2 OS=Synechococcus sp. (strain J... [more]
CH601_THEVL2.744e-5952.4260 kDa chaperonin 1 OS=Thermosynechococcus vulcanu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186176 ID=CN186176; Name=CN186176; organism=Citrus sinensis; type=EST; length=687bp
AGGTTGGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATT
GTGACTGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAA
CACTTCAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGG
ACTCCACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCT
AGAATTGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGA
CTCAGAGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTTGCTG
TTATTAAAGTTGGAGCTGCCACAGAAACTGAGCTTGAGGACCGTAAACTC
CGTATTGAAGATGCCAAGAATGCAACTTTTGCAGCCATAGAGGAAGGTAT
TGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTG
CTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAGGTGCTGACATT
GTGCAGAAGGCACTGGTAGCACCTGCATCACTGATAGCTCACAATGCTGG
AGTTGAAGGTGAGGTTGTTGTGGAGAAGGTGAAAGATAGTGAATGGACGA
CTGGTTACAATGCAATGACAGACAAGTATGAGAACATGCTTCAGGCTGGA
GTTATTGATCCTGCAAAGGTGACAAGATGTGCATTGC
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