CN186176

Overview
NameCN186176
Unique NameCN186176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_SCAIO (60 kDa chaperonin OS=Scardovia inopinata GN=groL PE=3 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.487e-52
Identity = 114/227 (50.22%), Postives = 151/227 (66.52%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQD+AI+TGA+  + +LGL +++      G A KV + KD TTI++ A SK+++ AR+AQ++ E+ ++DS YD EKL ER+AKL+GGVAVIKVGAATE E ++RK RIEDA     AAIEEG++PGGG ALV  +  V   K+   + DE  GA IV +A+ AP   IA NA                 +G NA T +YE++L AGV DP KVTR AL
Sbjct:  278 GFGDRRKAMLQDMAILTGAQVVSDELGLKLDSIDDTVFGHASKVIVSKDETTIVSGAGSKEDVAARVAQIRSEIEDSDSDYDREKLQERLAKLAGGVAVIKVGAATEVEAKERKHRIEDAVRNAKAAIEEGLLPGGGVALVQAAADVQ--KNVKLEGDEATGAGIVFRAIEAPLKQIAQNAGFSGEVVIDKVRTLPAGSGLNAATGEYEDLLSAGVTDPVKVTRSAL 502          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_PSEP1 (60 kDa chaperonin OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=groL PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.487e-52
Identity = 107/228 (46.93%), Postives = 157/228 (68.86%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQDIA++TG +  + ++GL +E  ++E LG A++V + K++TTII  A +  EI+AR+ Q++ ++ ET S YD EKL ER+AKL+GGVAVIKVGA TE E++++K R+EDA +AT AA+EEG+VPGGG ALV     + AI D K ++ D+ +G  ++++A+ +P   I  NA                  GYNA T +Y +M++ G++DPAKVTR AL
Sbjct:  280 GFGDRRKAMLQDIAVLTGGQVISEEIGLSLETATLEHLGNAKRVILSKENTTIIDGAGADTEIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGAGTEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRA---LAAIVDLKGDNEDQNVGIALLRRAVESPLRQITANAGDEPSVVADKVKQGSGNFGYNAATGEYGDMIEMGILDPAKVTRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_GEOMG (60 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groL PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.487e-52
Identity = 107/227 (47.14%), Postives = 156/227 (68.72%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIA++TG +  + +LG  +EN + + LGTA++VTI KD+TTII    S+ +IQ R+ Q++ ++ ET S YD EKL ER+AKL GGVAVIKVGAATETE++++K R+EDA +AT AA++EGIVPGGG A +     + A++     A+++ G  ++++AL  P   IA NA            + +   G+NA  D+Y +M+ AG+IDP KV+R AL
Sbjct:  279 GFGDRRKAMLEDIAVLTGGKVISEELGFKLENATFDMLGTAKRVTIDKDNTTIIDGDGSEADIQGRVKQIRAQIEETSSDYDREKLQERLAKLVGGVAVIKVGAATETEMKEKKARVEDALHATRAAVDEGIVPGGGVAYIR---SLGALEGISLPAEQQFGVTLIKRALEEPIRQIAQNAGVDGSIVVDKVKNGKDAFGFNAADDEYVDMIAAGIIDPTKVSRSAL 502          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_CLONN (60 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groL PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.487e-52
Identity = 109/227 (48.02%), Postives = 156/227 (68.72%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRK +L+DIAI+TG E  + ++G  +++ +++ LGTA  V I K++TTI+    +K+ I  R+ Q+++++ ET S +D EKL ER+AKL+GGVAV+KVGAATETEL++RKLRIEDA  AT AA+EEGIV GGG A +     V  + D  ++A+ RLG  I+++AL  P   IA NA            +SE   G++A+  +Y NM+Q G++DPAKVTR AL
Sbjct:  278 GFGDRRKEMLRDIAILTGGEVISEEVGRELKDVTLDMLGTAESVKISKENTTIVNGKGNKEVIADRVGQIRRQIEETSSEFDKEKLQERLAKLAGGVAVVKVGAATETELKERKLRIEDALAATKAAVEEGIVAGGGTAYLRAIKEVEKLTD--DNAEVRLGIAIIRRALEEPVRQIAANAGLEGSVIIDKIKNSEDGIGFDALEGEYTNMMQKGIVDPAKVTRSAL 502          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_CLOK5 (60 kDa chaperonin OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=groL PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.487e-52
Identity = 113/228 (49.56%), Postives = 150/228 (65.79%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED-ADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRK +LQDIAI+T  +  + +LG  ++  S+E LG A  V I K++TTI+     K  IQ R++Q+K ++ ET S +D EKL ER+AKLSGGVAVIKVGAATETEL+++K+RIEDA  AT A +EEG+ PGGG A V+    +P +     D AD ++G DI+ KAL  P   IA NA            +SE   GY+ +TDKY NM+  G++DP KVTR AL
Sbjct:  278 GFGDRRKEMLQDIAILTDGKVISEELGRDLKEVSLEDLGRAESVKIDKENTTIVNGRGDKKSIQDRVSQIKAQIEETTSEFDKEKLQERLAKLSGGVAVIKVGAATETELKEKKMRIEDALAATKAGVEEGMGPGGGTAYVNA---IPEVSKLTSDVADVKVGIDIITKALEEPVRQIAANAGVEGSVIIEKVKNSEPGVGYDVLTDKYVNMIDNGIVDPTKVTRSAL 502          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_CLOK1 (60 kDa chaperonin OS=Clostridium kluyveri (strain NBRC 12016) GN=groL PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.487e-52
Identity = 113/228 (49.56%), Postives = 150/228 (65.79%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED-ADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRK +LQDIAI+T  +  + +LG  ++  S+E LG A  V I K++TTI+     K  IQ R++Q+K ++ ET S +D EKL ER+AKLSGGVAVIKVGAATETEL+++K+RIEDA  AT A +EEG+ PGGG A V+    +P +     D AD ++G DI+ KAL  P   IA NA            +SE   GY+ +TDKY NM+  G++DP KVTR AL
Sbjct:  278 GFGDRRKEMLQDIAILTDGKVISEELGRDLKEVSLEDLGRAESVKIDKENTTIVNGRGDKKSIQDRVSQIKAQIEETTSEFDKEKLQERLAKLSGGVAVIKVGAATETELKEKKMRIEDALAATKAGVEEGMGPGGGTAYVNA---IPEVSKLTSDVADVKVGIDIITKALEEPVRQIAANAGVEGSVIIEKVKNSEPGVGYDVLTDKYVNMIDNGIVDPTKVTRSAL 502          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_CLOBO (60 kDa chaperonin OS=Clostridium botulinum GN=groL PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.487e-52
Identity = 109/227 (48.02%), Postives = 155/227 (68.28%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRK +L+DIAI+TG E  + +LG  I++ +++ LGTA  + + K++TTI+    SK EI+ RI Q+K+++ ET S +D EKL ER+AK++GGVAV+KVGAATETEL++RKLRIEDA  AT AA+EEGIV GGG A +     V  + D   +++ RLG  I+++AL  P   IA NA            + +   G++A+  +Y NM+Q G++DPAKVTR AL
Sbjct:  278 GFGDRRKEMLRDIAILTGGEVISEELGREIKDVTLDMLGTAESIKVTKENTTIVNGKGSKAEIEDRIGQIKRQIEETTSEFDKEKLQERLAKIAGGVAVVKVGAATETELKERKLRIEDALAATKAAVEEGIVAGGGTAYLRAIKEVEKLTD--NNSEIRLGIAIIRRALEEPVRQIASNAGLEGSVIIDKIMNGQEGMGFDALEGEYVNMVQKGIVDPAKVTRSAL 502          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_BUCMP (60 kDa chaperonin OS=Buchnera aphidicola subsp. Myzus persicae GN=groL PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.487e-52
Identity = 106/227 (46.70%), Postives = 153/227 (67.40%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQDI+I+TG    + +L + +E +++E LG A++V I KD+TTII     K  IQ+RI+Q+++E+ E  S YD EKL ER+AKLSGGVAV+KVGAATE E++++K R+EDA +AT AA+EEG+V GGG ALV ++     ++ + E  D+ +G  +  +A+ AP   I  N+            D +   GYNA TD+Y +M+  G++DP KVTR AL
Sbjct:  280 GFGDRRKAMLQDISILTGGSVISEELAMELEKSTLEDLGQAKRVVISKDTTTIIGGVGEKHTIQSRISQIRQEIQEATSDYDKEKLNERLAKLSGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAGKTSNLRGQNE--DQNVGIRVALRAMEAPLRQIVSNSGEEPSVVTNNVKDGKGNYGYNAATDEYGDMIDFGILDPTKVTRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_BLOPB (60 kDa chaperonin OS=Blochmannia pennsylvanicus (strain BPEN) GN=groL PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.487e-52
Identity = 107/228 (46.93%), Postives = 154/228 (67.54%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED-ADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQDIA++T     + ++GL +E  ++E +G A++V I KD+TTII    +K  I +R+AQ+ ++  E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ +++   AI++   D  D+ +G  + ++A+ AP   I  NA              E  TGYNA T+KY NM++ G++DP KVTR AL
Sbjct:  280 GFGDRRKAMLQDIAVLTAGTVISEEIGLELEKATLEDMGQAKRVVITKDATTIIDGVGNKSAINSRVAQINQQRDEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVAN---AIRNLCGDNEDQNVGIKVARRAMEAPLRQIMANAGEEPSVIANNVRSGEGNTGYNAATEKYGNMIELGILDPTKVTRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH605_SINMW (60 kDa chaperonin 5 OS=Sinorhizobium medicae (strain WSM419) GN=groL5 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.487e-52
Identity = 110/228 (48.25%), Postives = 156/228 (68.42%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG    + DLG+ +E+ +++ LG A+KV+I K++TTI+  A  K +I+ R+AQ+K ++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E++++K RI+DA NAT AA++EGIVPGGG AL+  S  +     K E+ D+  G +IV++AL +PA  I  NA            + +    GYNA T +Y +M+  G+IDP KV R AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITV---KGENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKDTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTAL 504          
The following BLAST results are available for this feature:
BLAST of CN186176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SCAIO2.487e-5250.2260 kDa chaperonin OS=Scardovia inopinata GN=groL P... [more]
CH60_PSEP12.487e-5246.9360 kDa chaperonin OS=Pseudomonas putida (strain F1... [more]
CH60_GEOMG2.487e-5247.1460 kDa chaperonin OS=Geobacter metallireducens (st... [more]
CH60_CLONN2.487e-5248.0260 kDa chaperonin OS=Clostridium novyi (strain NT)... [more]
CH60_CLOK52.487e-5249.5660 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH60_CLOK12.487e-5249.5660 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH60_CLOBO2.487e-5248.0260 kDa chaperonin OS=Clostridium botulinum GN=groL... [more]
CH60_BUCMP2.487e-5246.7060 kDa chaperonin OS=Buchnera aphidicola subsp. My... [more]
CH60_BLOPB2.487e-5246.9360 kDa chaperonin OS=Blochmannia pennsylvanicus (s... [more]
CH605_SINMW2.487e-5248.2560 kDa chaperonin 5 OS=Sinorhizobium medicae (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186176 ID=CN186176; Name=CN186176; organism=Citrus sinensis; type=EST; length=687bp
AGGTTGGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATT
GTGACTGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAA
CACTTCAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGG
ACTCCACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCT
AGAATTGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGA
CTCAGAGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTTGCTG
TTATTAAAGTTGGAGCTGCCACAGAAACTGAGCTTGAGGACCGTAAACTC
CGTATTGAAGATGCCAAGAATGCAACTTTTGCAGCCATAGAGGAAGGTAT
TGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTG
CTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAGGTGCTGACATT
GTGCAGAAGGCACTGGTAGCACCTGCATCACTGATAGCTCACAATGCTGG
AGTTGAAGGTGAGGTTGTTGTGGAGAAGGTGAAAGATAGTGAATGGACGA
CTGGTTACAATGCAATGACAGACAAGTATGAGAACATGCTTCAGGCTGGA
GTTATTGATCCTGCAAAGGTGACAAGATGTGCATTGC
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