CN186176

Overview
NameCN186176
Unique NameCN186176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_BUCBP (60 kDa chaperonin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=groL PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.243e-52
Identity = 106/227 (46.70%), Postives = 153/227 (67.40%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQDI+I+T     + +L + +E +++E LG A++V I KD+TTII     K  IQ+RI+Q+++++ E  S YD EKL ER+AKLSGGVAV+KVGAATE E++++K R+EDA +AT AA+EEG+VPGGG ALV ++  +  I  + E  D+ +G  +  +A+ AP   I  N+            D +   GYNA TD+Y +M+  G++DP KVTR AL
Sbjct:  280 GFGDRRKAMLQDISILTSGSVISEELAMELEKSTLEDLGQAKRVVINKDTTTIIGGIGEKYNIQSRISQIRQQIQEATSDYDKEKLNERLAKLSGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVAAKISNIVGQNE--DQNVGIRVALRAMEAPLRQIVSNSGEEPSVVTNNVKDGKGNYGYNAATDEYGDMISFGILDPTKVTRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_BEII9 (60 kDa chaperonin OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=groL PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.243e-52
Identity = 105/229 (45.85%), Postives = 162/229 (70.74%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDS-EWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG    + +LG+ +EN ++  LG A+++ I K++TTII  A +KD+I+ RI+Q+K ++AET S YD EK+ ER+AKL+GGVAV++VG +TE E++++K R++DA NAT AA+EEG+ PGGG AL+     + A+++   +++D++ G +IV+KA+  PA  I  N+            +S E+  GYNA T +Y +M++ G+IDP KV R AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGTLISEELGIKLENVTLAMLGRAKRIRIDKEATTIIDGAGNKDDIEGRISQIKAQIAETTSDYDREKMQERLAKLAGGVAVLRVGGSTEVEVKEKKDRVDDALNATRAAVEEGVSPGGGVALLRA---IKALENLPTDNSDQKAGIEIVRKAIQTPAKQIVDNSGGDGAVVVGKLLESNEYAFGYNAQTGEYGDMVKLGIIDPTKVVRTAL 505          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_BARBK (60 kDa chaperonin OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=groL PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.243e-52
Identity = 106/228 (46.49%), Postives = 157/228 (68.86%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDS-EWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIA++T  +  + D+G+ +EN ++E LG A+KV + K++TTI+  A  K EI AR++Q+K ++ ET S YD EKL ER+AKL+GGVAVI+VG +TE E++++K R++DA NAT AA+EEGIVPGGG AL+  +    A+  K ++ D+  G  I+++AL APA  IAHNA            ++   T GYN  T ++ +++  G++DP KV R AL
Sbjct:  280 GFGDRRKAMLEDIAVLTSGQVISEDVGIKLENVTLEMLGRAKKVHVSKETTTIVDGAGQKSEINARVSQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALNATRAAVEEGIVPGGGTALLRAA---KALSIKGKNPDQEAGIGIIRRALQAPARQIAHNAGEEAAVIVGKVLENCSDTFGYNTATAQFGDLISFGIVDPVKVVRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_BACST (60 kDa chaperonin OS=Bacillus stearothermophilus GN=groL PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.243e-52
Identity = 111/227 (48.90%), Postives = 153/227 (67.40%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG E  + +LG  +++ ++  LG A KV + K++TTI+  A     I+ARI Q++ +L ET S +D EKL ER+AKL+GGVAVIKVGAATETEL++RKLRIEDA N+T AA+EEGIV GGG AL+++   V AI+    + DE  G  IV +A+  P   IA  A              +   G+NA T ++ +M++AG++DP KVTR AL
Sbjct:  278 GFGDRRKAMLEDIAILTGGEVISEELGRELKSATIASLGRASKVVVTKENTTIVEGAGDSKRIKARINQIRAQLEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVAGGGTALMNVYSKVAAIE---AEGDEATGVKIVLRAIEEPVRQIAQTAGLEGSIIVERLKTEKPGIGFNAATGEWVDMIEAGIVDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH604_RHIME (60 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.243e-52
Identity = 110/228 (48.25%), Postives = 155/228 (67.98%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG    + DLG+ +E+ +++ LG A+KV+I K++TTI+  A  K +I+ R+AQ+K ++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E++++K RI+DA NAT AA++EGIVPGGG AL+  S  +     K E+ D+  G +IV++AL +PA  I  NA            +      GYNA T +Y +M+  G+IDP KV R AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITV---KGENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH603_BURCM (60 kDa chaperonin 3 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=groL3 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.243e-52
Identity = 107/227 (47.14%), Postives = 155/227 (68.28%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TGA   + + G  ++  S+E LG+A++V +RK+ T II  A  ++ I+AR+  ++ ++ ET S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R++DA +AT AA+EEGIVPGGG AL+       ++K    ++D+  G  IV +AL AP  +IA NA            + +   GYNA T +Y ++++AGV+DP KVTR AL
Sbjct:  280 GFGDRRKAMLEDIAILTGATVISEETGKQLQKASLEDLGSAKRVEVRKEDTIIIDGAGDQERIEARVKSIRTQIDETTSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSTATSLKG--ANSDQDAGIQIVLRALEAPLRVIASNAGDEPSVVIAKVLEGKGNFGYNAATGEYGDLVEAGVVDPTKVTRTAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_ANADE (60 kDa chaperonin 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=groL2 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.243e-52
Identity = 109/228 (47.81%), Postives = 158/228 (69.30%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDS-EWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG    A +LGL +E  +++ LG A++VT+ KD+TTI+  A  K++I+AR+  ++ ++ ET S YD EKL ER+AKL GGVAVI VGAATETE++++K R+EDA +AT AA+EEGIVPGGG A +     V A++    +  E++G DIV++A+  P   I+ N             ++ E   G+NA T +YE++++AGVIDP KV+R AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGRMIAEELGLKLEQVTLKDLGRAKRVTVDKDNTTIVDGAGKKEDIEARVKTIRAQIEETTSDYDREKLQERLAKLVGGVAVINVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVAYLRC---VKALEGVKVNEGEKVGLDIVRRAIEEPLRQISGNGGYEGSIVVNKVKEAKEAAFGFNAATGEYEDLVKAGVIDPTKVSRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH601_RHIME (60 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1 PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 4.243e-52
Identity = 110/228 (48.25%), Postives = 155/228 (67.98%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG    + DLG+ +E+ +++ LG A+KV+I K++TTI+  A  K +I+ R+AQ+K ++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E++++K RI+DA NAT AA++EGIVPGGG AL+  S  +     K E+ D+  G +IV++AL +PA  I  NA            +      GYNA T +Y +M+  G+IDP KV R AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITV---KGENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_TSUPA (60 kDa chaperonin OS=Tsukamurella paurometabola GN=groL PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.541e-52
Identity = 114/227 (50.22%), Postives = 149/227 (65.64%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQD+AI+TG +  + ++GL +E   +E LG AR+V + KD TTI+  A SK++I+ R++Q++ E+  +DS YD EKL ER+AKL+GGVAVIK GAATE EL++RK RIEDA     AA+EEGIV GGGAAL         +     + DE  GA+IV+ AL AP   IA NA            +S   TG NA T  YE++L AG+ DP KVTR AL
Sbjct:  278 GFGDRRKAMLQDMAILTGGQVISEEVGLSLETAGLELLGQARQVVVTKDETTIVDGAGSKEQIEGRVSQIRAEIESSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGAALAQSGKVFETLN---LEGDEATGANIVKVALDAPVKQIAINAGLEPGVVAEKVRNSPAGTGLNAATGVYEDLLAAGINDPVKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_STRTD (60 kDa chaperonin OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=groL PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.541e-52
Identity = 113/227 (49.78%), Postives = 153/227 (67.40%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIA++TGA     DLGL +++ ++E LG A KVT+ KDST I+  A S + I  R+  +K +L  T S +D EKL ER+AKLSGGVAVIKVGAATET L++ KLRIEDA NAT AA+EEGIV GGG ALV++   +  + +   + D+  G +IV +AL  P   IA+NA            +S   TG+NA   ++ +M+++G+IDP KVTR AL
Sbjct:  278 GFGDRRKAMLEDIAVLTGATVITEDLGLELKDATMESLGQASKVTVDKDSTVIVEGAGSAEAIANRVNLIKSQLETTTSEFDREKLQERLAKLSGGVAVIKVGAATETALKEMKLRIEDALNATRAAVEEGIVAGGGTALVNV---IAKVAELDLEGDDATGRNIVLRALEEPVRQIAYNAGYEGSVIIDKLKNSPVGTGFNAANGEWVDMVESGIIDPVKVTRSAL 501          
The following BLAST results are available for this feature:
BLAST of CN186176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BUCBP4.243e-5246.7060 kDa chaperonin OS=Buchnera aphidicola subsp. Ba... [more]
CH60_BEII94.243e-5245.8560 kDa chaperonin OS=Beijerinckia indica subsp. in... [more]
CH60_BARBK4.243e-5246.4960 kDa chaperonin OS=Bartonella bacilliformis (str... [more]
CH60_BACST4.243e-5248.9060 kDa chaperonin OS=Bacillus stearothermophilus G... [more]
CH604_RHIME4.243e-5248.2560 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4... [more]
CH603_BURCM4.243e-5247.1460 kDa chaperonin 3 OS=Burkholderia ambifaria (str... [more]
CH602_ANADE4.243e-5247.8160 kDa chaperonin 2 OS=Anaeromyxobacter dehalogena... [more]
CH601_RHIME4.243e-5248.2560 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1... [more]
CH60_TSUPA5.541e-5250.2260 kDa chaperonin OS=Tsukamurella paurometabola GN... [more]
CH60_STRTD5.541e-5249.7860 kDa chaperonin OS=Streptococcus thermophilus (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186176 ID=CN186176; Name=CN186176; organism=Citrus sinensis; type=EST; length=687bp
AGGTTGGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATT
GTGACTGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAA
CACTTCAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGG
ACTCCACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCT
AGAATTGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGA
CTCAGAGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTTGCTG
TTATTAAAGTTGGAGCTGCCACAGAAACTGAGCTTGAGGACCGTAAACTC
CGTATTGAAGATGCCAAGAATGCAACTTTTGCAGCCATAGAGGAAGGTAT
TGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTG
CTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAGGTGCTGACATT
GTGCAGAAGGCACTGGTAGCACCTGCATCACTGATAGCTCACAATGCTGG
AGTTGAAGGTGAGGTTGTTGTGGAGAAGGTGAAAGATAGTGAATGGACGA
CTGGTTACAATGCAATGACAGACAAGTATGAGAACATGCTTCAGGCTGGA
GTTATTGATCCTGCAAAGGTGACAAGATGTGCATTGC
back to top