CN186176

Overview
NameCN186176
Unique NameCN186176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.541e-52
Identity = 110/228 (48.25%), Postives = 157/228 (68.86%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXD-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+T     + DLG+ +EN ++  LG A+KV I K++TTII  A SK E+  R AQ++ ++ ET S YD EKL ER+AKL+GGVAVI+VG +TE E++++K R++DA +AT AA+EEGI+PGGG AL+     + +I  K  + D+R+G DIV++A+ AP   IA NA            + S+++ G+NA T +Y ++   GVIDPAKV R AL
Sbjct:  280 GFGDRRKAMLEDIAILTAGTVISEDLGIKLENVTLNMLGRAKKVAIEKENTTIIDGAGSKAELDGRTAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDSI--KTANDDQRVGVDIVRRAIEAPVRQIAENAGAEGSIIVGKLREKSDFSYGWNAQTGEYGDLYAQGVIDPAKVVRTAL 505          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH601_SYNAS (60 kDa chaperonin 1 OS=Syntrophus aciditrophicus (strain SB) GN=groL1 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.541e-52
Identity = 108/227 (47.58%), Postives = 157/227 (69.16%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG +  + +LG+ +++ ++  LGT +++ I KD+TTI+  A S+ +I+ R+ Q++ ++ ET S YD EKL ER+AKL GGVAVIKVGAATE E++++K R+EDA +AT AA+EEGIVPGGG AL+     +PA+       DER G +IV++A+  P   IA NA            ++    G+NA T+KY +M++AG+IDP KV R AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGKVVSEELGIKLDSITLTDLGTCKRLHITKDNTTIVDGAGSQADIEGRVKQIRTQIEETTSDYDREKLQERLAKLVGGVAVIKVGAATEIEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRT---LPALAGMDLPDDERPGLNIVKRAVEEPMRQIAANAGFEGSIVVEKVKENTGNFGFNADTEKYVDMMEAGIIDPTKVVRFAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH601_FRAAA (60 kDa chaperonin 1 OS=Frankia alni (strain ACN14a) GN=groL1 PE=3 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 5.541e-52
Identity = 114/228 (50.00%), Postives = 152/228 (66.67%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKL-EDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKALLQDIA++TG +  AG++GL ++  ++  LG AR+V + K++TTI+      D +  R+ QLK E+  +DS +D EKL ER+AKL+GGVAVI+VGAATE EL+++K R+EDA +AT AAIEEGIV GGGAAL H++     + D L    DE  G  IV+ AL AP + IA NA            D     GYNA T +Y +++ AGVIDP KVTR A+
Sbjct:  278 GFGDRRKALLQDIAVLTGGQVVAGEVGLSLDAVTLADLGRARRVVVDKENTTIVDGGGEADAVADRVRQLKAEIETSDSDWDREKLQERLAKLAGGVAVIRVGAATEVELKEKKHRLEDAVSATRAAIEEGIVAGGGAALAHVTS---VLDDGLGRTGDELAGVRIVRTALDAPLNWIARNAGLEGAVIVARVKDLAPGHGYNAATGEYTDLIAAGVIDPVKVTRSAV 502          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_NITEU (60 kDa chaperonin OS=Nitrosomonas europaea GN=groL PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.237e-52
Identity = 109/227 (48.02%), Postives = 150/227 (66.08%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG    A ++GL +E T +E LG A+++ + K++TTII  A     I+AR+AQ++K++ E  S YD EKL ER+AKL+GGVA+IKVGAATE E++++K R+EDA +AT AA+EEGIVPGGG AL+   + V  IK    D D   G  IV +A+  P   I  N             + + T GYNA T +Y +++  GV+DP KVTR AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGTVIAEEVGLSLEKTRLEDLGQAKRIEVGKENTTIIDGAGDVKTIEARVAQIRKQIEEASSDYDREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRTINAVSKIKGDNHDQDS--GIKIVLRAMEEPLRQIVTNCGDEASVVVNKVKEGQGTFGYNAATGEYGDLVAMGVLDPTKVTRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_METFK (60 kDa chaperonin OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=groL PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.237e-52
Identity = 109/227 (48.02%), Postives = 152/227 (66.96%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG    A ++GL +E  ++E LG A++V I K++TTII  A S++ I+ RI Q+KK++ +  S YD EKL ER+AKL+GGVAVIKVGAATETE++++K R+EDA +AT AA+EEGIVPGGG AL+     +  +K   ++ D+  G  IV +A+  P   I  NA            +     GYNA    Y ++++ GV+DPAKVTR AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGTVIAEEVGLSLEKVTLENLGQAKRVEIGKENTTIIDGAGSENNIKVRIDQIKKQIEDATSDYDREKLQERVAKLAGGVAVIKVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRARSSIKELKG--DNPDQDAGIKIVLRAIEEPLRQIVANAGDEPSVVVNKVLEGTGNYGYNASNGTYGDLVELGVLDPAKVTRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_MARMM (60 kDa chaperonin OS=Maricaulis maris (strain MCS10) GN=groL PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.237e-52
Identity = 109/228 (47.81%), Postives = 157/228 (68.86%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+D+AI+TG +  + DLG+ +E  +++ LG+A++V I KD TTI+     K +I+AR+ Q++++  ET S YD EKL ER+AKL+GGVAVIKVG ATE E++++K R++DA NAT AA+EEGIVPGGG AL+  S  +  ++   ++AD+  G  IV +AL +P   IA N+            ++   T G+NA T++Y +ML  GVIDPAKV R AL
Sbjct:  280 GFGDRRKAMLEDLAILTGGQVISEDLGIKLETVTLDMLGSAKRVNITKDDTTIVDGVGDKAQIEARVTQIRRQSEETTSDYDREKLQERLAKLAGGVAVIKVGGATEIEVKEKKDRVDDALNATRAAVEEGIVPGGGVALLKASAKLAGLEG--DNADQTQGIAIVARALQSPIRQIATNSGVEGSIVVGKVMENPSATFGFNAQTEEYGDMLAFGVIDPAKVVRTAL 505          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_GLUOX (60 kDa chaperonin OS=Gluconobacter oxydans GN=groL PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.237e-52
Identity = 105/228 (46.05%), Postives = 159/228 (69.74%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSE-WTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG +  + D+G+ +E+ ++E LG A+K+ I K++TTI+  A + D+I+ R  Q++ ++ ET S YD EKL ER+AKL+GGVAVI+VG +TE E+++RK R++DA +AT AA+EEGIVPGGG AL   S  +  +    ++ D+R+G +IV+KAL AP   IA NA            ++E +  G++A   +Y++++ AG+IDP KV R AL
Sbjct:  280 GFGDRRKAMLEDIAILTGGQVISEDIGIKLESVTLEMLGRAKKIHIEKENTTIVEGAGNSDDIKGRCNQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALARASSALKGL--TFDNDDQRVGGEIVRKALQAPLRQIAFNAGEDGAVIAGKVLENEGYVFGFDAQKGEYKDLVAAGIIDPTKVVRTAL 505          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_CYTH3 (60 kDa chaperonin OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=groL PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.237e-52
Identity = 105/227 (46.26%), Postives = 149/227 (65.64%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG    + + G  +EN ++E LGTA K+ I KD+TT++  +  KD I AR+ Q+K ++  T S YD EKL ER+AKLSGGVA++ +GAATE E++++K R++DA +AT AA+EEGIVPGGG AL+     +  +     + DE+ G  I++ A+ +P   I +NA            +     GYNA  D+YE M+ AG+IDP KVTR AL
Sbjct:  279 GFGDRRKAMLEDIAILTGGTVISEESGYKLENATLEYLGTAEKINIDKDNTTVVNGSGLKDNIVARVNQIKSQMENTTSDYDREKLQERLAKLSGGVAIMYIGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALIRAGAALDNV--AFHNEDEKTGIQIIRTAIESPLRAIVYNAGLEGSVIVQKVKEGTGDYGYNAREDRYEAMIAAGIIDPTKVTRLAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_CLOTE (60 kDa chaperonin OS=Clostridium tetani GN=groL PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.237e-52
Identity = 110/227 (48.46%), Postives = 153/227 (67.40%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRK +L+DIA +TG +  + ++G  +++ +V+ LG A  V I K++TTI+    +K EI+ R+ Q+K ++ ET S +D EKL ER+AKL+GGVAVIKVGAATETEL++RKLRIEDA  AT AA+EEGI+PGGG A   +   V  +    E  D +LG DIV+K+L  P   IA NA             SE   GY+A+ ++Y NM++AG++DP KV+R AL
Sbjct:  280 GFGDRRKEMLEDIATLTGGQVISEEIGRDLKDVTVDMLGRAESVKITKETTTIVNGKGNKKEIEDRVNQIKAQIEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALAATKAAVEEGIIPGGGTAYAMVIKEVEKLNS--ETHDIKLGIDIVKKSLEEPVRQIACNAGVEGSIVIEKVKHSEAGIGYDALNNEYVNMIKAGIVDPTKVSRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_BACFR (60 kDa chaperonin OS=Bacteroides fragilis GN=groL PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.237e-52
Identity = 110/227 (48.46%), Postives = 150/227 (66.08%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRK +L+DIA++TG    + + GL +E  ++E LGTA KVT+ KD+TTI+  A +K+ I+ R  Q+K ++A T S YD EKL ER+AKLSGGVAV+ VGAA+E E++++K R++DA  AT AAIEEGIV GGG A +   + +  +K   E+ DE  G  I+++A+  P   I  NA            + +   GYNA TD YENM  AGV+DPAKVTR AL
Sbjct:  280 GFGDRRKEMLEDIAVLTGGVVISEEKGLKLEQATIEMLGTADKVTVSKDNTTIVNGAGAKENIKERCDQIKAQIAATKSDYDREKLQERLAKLSGGVAVLYVGAASEVEMKEKKDRVDDALRATRAAIEEGIVAGGGVAYIRAIESLDGLKG--ENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKVSEGKGDFGYNARTDVYENMHAAGVVDPAKVTRVAL 504          
The following BLAST results are available for this feature:
BLAST of CN186176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_RHIEC5.541e-5248.2560 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]
CH601_SYNAS5.541e-5247.5860 kDa chaperonin 1 OS=Syntrophus aciditrophicus (... [more]
CH601_FRAAA5.541e-5250.0060 kDa chaperonin 1 OS=Frankia alni (strain ACN14a... [more]
CH60_NITEU7.237e-5248.0260 kDa chaperonin OS=Nitrosomonas europaea GN=groL... [more]
CH60_METFK7.237e-5248.0260 kDa chaperonin OS=Methylobacillus flagellatus (... [more]
CH60_MARMM7.237e-5247.8160 kDa chaperonin OS=Maricaulis maris (strain MCS1... [more]
CH60_GLUOX7.237e-5246.0560 kDa chaperonin OS=Gluconobacter oxydans GN=groL... [more]
CH60_CYTH37.237e-5246.2660 kDa chaperonin OS=Cytophaga hutchinsonii (strai... [more]
CH60_CLOTE7.237e-5248.4660 kDa chaperonin OS=Clostridium tetani GN=groL PE... [more]
CH60_BACFR7.237e-5248.4660 kDa chaperonin OS=Bacteroides fragilis GN=groL ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186176 ID=CN186176; Name=CN186176; organism=Citrus sinensis; type=EST; length=687bp
AGGTTGGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATT
GTGACTGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAA
CACTTCAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGG
ACTCCACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCT
AGAATTGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGA
CTCAGAGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTTGCTG
TTATTAAAGTTGGAGCTGCCACAGAAACTGAGCTTGAGGACCGTAAACTC
CGTATTGAAGATGCCAAGAATGCAACTTTTGCAGCCATAGAGGAAGGTAT
TGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTG
CTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAGGTGCTGACATT
GTGCAGAAGGCACTGGTAGCACCTGCATCACTGATAGCTCACAATGCTGG
AGTTGAAGGTGAGGTTGTTGTGGAGAAGGTGAAAGATAGTGAATGGACGA
CTGGTTACAATGCAATGACAGACAAGTATGAGAACATGCTTCAGGCTGGA
GTTATTGATCCTGCAAAGGTGACAAGATGTGCATTGC
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