CN186176

Overview
NameCN186176
Unique NameCN186176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_CHLFF (60 kDa chaperonin OS=Chlamydophila felis (strain Fe/C-56) GN=groL PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.721e-57
Identity = 112/227 (49.34%), Postives = 159/227 (70.04%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG +  + +LG+ +ENT++  LG A+KV + K+ TTI+    +K++I+AR   +KK++ ++ S YD EKL ER+AKLSGGVAVI+VGAATE E++++K R++DA++AT AA+EEGI+PGGG ALV     + A    L + DE++GA IV KAL AP   IA NA                  GY+A+ D Y +M++AG++DP KVTRCAL
Sbjct:  280 GFGDRRKAMLEDIAILTGGQLISEELGMKLENTTLSMLGKAKKVIVSKEDTTIVEGLGNKEDIEARCENIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATLAAVEEGILPGGGTALVRCIPTLEAFIPILTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIICQQVLARSSNEGYDALRDAYTDMIEAGILDPTKVTRCAL 506          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 220.705 bits (561), Expect = 5.721e-57
Identity = 120/231 (51.95%), Postives = 165/231 (71.43%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD----KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRK +L+DIA +TG +  + D GL +E+ +V+ LG+AR++ I KD+TTI+A+  ++  +++R  Q+++++ ETDS YD EKL ER+AKL+GGVAVIKVGAATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L HL+   P ++D     L+D +E  GA IV +AL AP   IA NA            + E+  GYNA + +Y +ML AG++DPAKVTR AL
Sbjct:  279 GFGDRRKQMLEDIATLTGGQVISEDAGLKLESATVDSLGSARRINITKDNTTIVAEG-NEAAVKSRCEQIRRQIEETDSSYDKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLA---PQLEDWATGNLKD-EELTGALIVARALPAPLKRIAENAGQNGAVISERVKEKEFNVGYNAASLEYVDMLAAGIVDPAKVTRSAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_CLOTH (60 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groL PE=1 SV=3)

HSP 1 Score: 220.32 bits (560), Expect = 7.471e-57
Identity = 118/227 (51.98%), Postives = 159/227 (70.04%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIAI+TG +    DLGL +++T+VEQLG AR+V ++K++T I+  A    EIQ RIA +K ++ ET S +D EKL ER+AKL+GGVAVI+VGAATETE++++KLRIEDA  AT AA+EEGIV GGG ALV++   V  + D +   DE+ G  I+ +AL  P   IA NA             SE   G++A  +KY NM++AG++DPAKVTR AL
Sbjct:  278 GFGDRRKAMLEDIAILTGGQVITSDLGLELKDTTVEQLGRARQVKVQKENTIIVDGAGDPKEIQKRIASIKSQIEETTSDFDREKLQERLAKLAGGVAVIQVGAATETEMKEKKLRIEDALAATKAAVEEGIVAGGGTALVNVIPKVAKVLDTV-SGDEKTGVQIILRALEEPVRQIAENAGLEGSVIVEKVKASEPGIGFDAYNEKYVNMIEAGIVDPAKVTRSAL 503          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_STAEP (60 kDa chaperonin OS=Staphylococcus epidermidis GN=groL PE=3 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 9.758e-57
Identity = 117/227 (51.54%), Postives = 157/227 (69.16%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+D+AI+TGA+    DLGL +++ S++ LGTA KV + KD TT++     ++ I AR+ Q+K ++ ETDS  D EKL ER+AKL+GGVAVIKVGAA++TEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  IK    + D   G +IV KAL AP   IA NA             +E   G+NA T+++ NML+ G++DP KVTR AL
Sbjct:  278 GFGDRRKAMLEDLAILTGAQVITDDLGLELKDASLDMLGTANKVEVTKDHTTVVDGNGDENNIDARVGQIKAQIEETDSECDKEKLQERVAKLAGGVAVIKVGAASDTELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIK---AEGDVETGVNIVLKALQAPVRQIAENAGLEGSIIVERLKHAEAGVGFNAATNEWVNMLEEGIVDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_NAUPA (60 kDa chaperonin OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=groL PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.758e-57
Identity = 116/227 (51.10%), Postives = 162/227 (71.37%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+LQDIAI+TG +  + +LG  +E+ ++  LG A +V + K++TTI+     K  I+ARIAQ+KKE+ ET S YD EKL ER+AKLSGGVAVIKVGAATETE++++K R++DA +AT AA+EEGIV GGGAA++  + ++      +EDADE++G DIV++A+ AP   IA NA            +++  TG+NA T +Y +M +AG+IDP KV R AL
Sbjct:  281 GFGDRRKAMLQDIAILTGGQVISEELGRTLESATLADLGQAGRVVVDKENTTIVDGRGDKAAIEARIAQIKKEIEETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAAILKAAKNISV---NVEDADEKIGVDIVKQAVKAPIKQIAKNAGFEPGIVAMKVEEADENTGFNAATGEYVDMFKAGIIDPTKVERIAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_LACH4 (60 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groL PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.758e-57
Identity = 118/227 (51.98%), Postives = 156/227 (68.72%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA LQDIA +TG      DLGL +++T ++QLG AR++T+ KDSTTI+  A SK+ I  R+  ++K++ ++ S +D +KL ER+AKL+GGVAVI VGAATETEL++R+ RIEDA N+T AA++EG V GGG ALV++   V  +K   E  DE+ G +IV +AL AP   IA NA              E   GYNA TDK+ENM+ AG+IDP KVTR AL
Sbjct:  278 GFGDRRKAQLQDIAALTGGTVITEDLGLELKDTKIDQLGQARRITVTKDSTTIVDGAGSKEAIDERVDTIRKQIEDSTSDFDKKKLQERLAKLTGGVAVIHVGAATETELKERRYRIEDALNSTRAAVDEGYVAGGGTALVNVEKAVREVKG--ETTDEQTGINIVLRALSAPVRQIAENAGKDGSVILDKLEHQENEIGYNAATDKWENMVDAGIIDPTKVTRTAL 502          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH601_MESSB (60 kDa chaperonin 1 OS=Mesorhizobium sp. (strain BNC1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.758e-57
Identity = 115/228 (50.44%), Postives = 161/228 (70.61%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIA++TG +  + DLG+ +EN +++ LG A++V+I K++TTI+  A  K EI+ R+AQ+K ++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E++++K R++DA NAT AA+EEGIVPGGG AL+  S     IK K E+AD+  G +IV++A+ APA  IA NA            D+   T GYNA T +Y +M+  G++DP KV R AL
Sbjct:  280 GFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVSIAKETTTIVDGAGQKSEIEGRVAQIKSQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVPGGGTALLRASSE---IKAKGENADQEAGVNIVRRAIQAPARQIASNAGAEASIVVGKILDNNAVTFGYNAQTGEYGDMIGMGIVDPMKVVRTAL 504          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.664e-56
Identity = 114/228 (50.00%), Postives = 155/228 (67.98%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFGER+   L DIAI+TG      ++GL ++    E LG A KV + KD+TTI+ D ++++ +  R++Q+K ++   +  Y+ EKL+ERIAKLSGGVAVI+VGA TETEL+++KLR+EDA NAT AA+EEGIV GGG  L+ L+  V AIKD L + +E++GADIV++AL  P  LIA NA             S+    GYNA T KYE+++ AG+IDP KV RC L
Sbjct:  328 GFGERKSQYLDDIAILTGGTVIREEVGLTLDKADKEVLGNAAKVVLTKDTTTIVGDGSTQEAVNKRVSQIKNQIEAAEQEYEKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCL 555          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_OCEIH (60 kDa chaperonin OS=Oceanobacillus iheyensis GN=groL PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.664e-56
Identity = 114/227 (50.22%), Postives = 157/227 (69.16%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA+L+DIA++TGAE    DLGL +++ S++QLG A KV + K++TT++  +   + I +R+AQ++ +  E+ S +D EKL ER+AKL+GGVAVIKVGAATETEL++RKLRIEDA N+T A +EEG+VPGGG ALV++   V    +   + DE  GA IV +AL  P   I HNA              +   GYNA TD++ NM++AG++DP KVTR AL
Sbjct:  278 GFGDRRKAMLEDIAVLTGAEVITEDLGLDLKSASIDQLGRASKVVVTKENTTVVEGSGDPEAISSRVAQIRAQAEESTSDFDKEKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAGVEEGMVPGGGTALVNIHRQV---SELTLEGDEATGASIVLRALEEPVRQIVHNAGLEGSIIVERLKGEKVGIGYNAATDEWVNMVEAGIVDPTKVTRSAL 501          
BLAST of CN186176 vs. ExPASy Swiss-Prot
Match: CH60_LACBA (60 kDa chaperonin OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=groL PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.664e-56
Identity = 115/227 (50.66%), Postives = 157/227 (69.16%), Query Frame = 3
Query:    6 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 686
            GFG+RRKA LQDIA++TG      DLGL +++T+++QLG A+KV + KD TT++  A SKD+I AR+A++K ++ +T S +D +KL ER+AKLSGGVAV++VGAATETEL++RK RIEDA NAT AA+EEG V GGG AL+++   V  ++    + DE+ G +IV +AL  P   IA NA              +   GYNA  +KYE+M+ AG+ DP KVTR AL
Sbjct:  278 GFGDRRKAQLQDIAVLTGGTVITDDLGLNLKDTTIDQLGQAQKVNVTKDDTTVVEGAGSKDQIAARVAEIKGQIEDTTSDFDRDKLKERLAKLSGGVAVVRVGAATETELKERKYRIEDALNATRAAVEEGFVAGGGTALINVIGDVAKLE---AEGDEKTGINIVLRALEEPVRQIAQNAGVEGSVVVEHLKGEKPGVGYNAADNKYEDMVAAGITDPTKVTRSAL 501          
The following BLAST results are available for this feature:
BLAST of CN186176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CHLFF5.721e-5749.3460 kDa chaperonin OS=Chlamydophila felis (strain F... [more]
CH601_SYNY35.721e-5751.9560 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH60_CLOTH7.471e-5751.9860 kDa chaperonin OS=Clostridium thermocellum (str... [more]
CH60_STAEP9.758e-5751.5460 kDa chaperonin OS=Staphylococcus epidermidis GN... [more]
CH60_NAUPA9.758e-5751.1060 kDa chaperonin OS=Nautilia profundicola (strain... [more]
CH60_LACH49.758e-5751.9860 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH601_MESSB9.758e-5750.4460 kDa chaperonin 1 OS=Mesorhizobium sp. (strain B... [more]
RUBB_PEA1.664e-5650.00RuBisCO large subunit-binding protein subunit beta... [more]
CH60_OCEIH1.664e-5650.2260 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH60_LACBA1.664e-5650.6660 kDa chaperonin OS=Lactobacillus brevis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186176 ID=CN186176; Name=CN186176; organism=Citrus sinensis; type=EST; length=687bp
AGGTTGGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATT
GTGACTGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAA
CACTTCAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGG
ACTCCACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCT
AGAATTGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGA
CTCAGAGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTTGCTG
TTATTAAAGTTGGAGCTGCCACAGAAACTGAGCTTGAGGACCGTAAACTC
CGTATTGAAGATGCCAAGAATGCAACTTTTGCAGCCATAGAGGAAGGTAT
TGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTG
CTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAGGTGCTGACATT
GTGCAGAAGGCACTGGTAGCACCTGCATCACTGATAGCTCACAATGCTGG
AGTTGAAGGTGAGGTTGTTGTGGAGAAGGTGAAAGATAGTGAATGGACGA
CTGGTTACAATGCAATGACAGACAAGTATGAGAACATGCTTCAGGCTGGA
GTTATTGATCCTGCAAAGGTGACAAGATGTGCATTGC
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