CN186175

Overview
NameCN186175
Unique NameCN186175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:367..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_SALTI (60 kDa chaperonin OS=Salmonella typhi GN=groL PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 82/177 (46.33%), Postives = 120/177 (67.80%), Query Frame = -1 
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N            K  +   GYNA T++Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +
Sbjct:  346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECM 520
[Close]
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_SALSV (60 kDa chaperonin OS=Salmonella schwarzengrund (strain CVM19633) GN=groL PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 82/177 (46.33%), Postives = 120/177 (67.80%), Query Frame = -1 
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N            K  +   GYNA T++Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +
Sbjct:  346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECM 520
[Close]
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_SALPK (60 kDa chaperonin OS=Salmonella paratyphi A (strain AKU_12601) GN=groL PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 82/177 (46.33%), Postives = 120/177 (67.80%), Query Frame = -1 
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N            K  +   GYNA T++Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +
Sbjct:  346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECM 520
[Close]
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_SALPC (60 kDa chaperonin OS=Salmonella paratyphi C (strain RKS4594) GN=groL PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 82/177 (46.33%), Postives = 120/177 (67.80%), Query Frame = -1 
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N            K  +   GYNA T++Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +
Sbjct:  346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECM 520
[Close]
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_SALPB (60 kDa chaperonin OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=groL PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 82/177 (46.33%), Postives = 120/177 (67.80%), Query Frame = -1 
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N            K  +   GYNA T++Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +
Sbjct:  346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECM 520
[Close]
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_SALPA (60 kDa chaperonin OS=Salmonella paratyphi A GN=groL PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 82/177 (46.33%), Postives = 120/177 (67.80%), Query Frame = -1 
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N            K  +   GYNA T++Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +
Sbjct:  346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECM 520
[Close]
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_SALHS (60 kDa chaperonin OS=Salmonella heidelberg (strain SL476) GN=groL PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 82/177 (46.33%), Postives = 120/177 (67.80%), Query Frame = -1 
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N            K  +   GYNA T++Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +
Sbjct:  346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECM 520
[Close]
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_SALG2 (60 kDa chaperonin OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=groL PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 82/177 (46.33%), Postives = 120/177 (67.80%), Query Frame = -1 
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N            K  +   GYNA T++Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +
Sbjct:  346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECM 520
[Close]
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_SALEP (60 kDa chaperonin OS=Salmonella enteritidis PT4 (strain P125109) GN=groL PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 82/177 (46.33%), Postives = 120/177 (67.80%), Query Frame = -1 
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N            K  +   GYNA T++Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +
Sbjct:  346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECM 520
[Close]
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_SALDC (60 kDa chaperonin OS=Salmonella dublin (strain CT_02021853) GN=groL PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 82/177 (46.33%), Postives = 120/177 (67.80%), Query Frame = -1 
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N            K  +   GYNA T++Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +
Sbjct:  346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECM 520
The following BLAST results are available for this feature:
BLAST of CN186175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SALTI1.128e-3846.3360 kDa chaperonin OS=Salmonella typhi GN=groL PE=3... [more]
CH60_SALSV1.128e-3846.3360 kDa chaperonin OS=Salmonella schwarzengrund (st... [more]
CH60_SALPK1.128e-3846.3360 kDa chaperonin OS=Salmonella paratyphi A (strai... [more]
CH60_SALPC1.128e-3846.3360 kDa chaperonin OS=Salmonella paratyphi C (strai... [more]
CH60_SALPB1.128e-3846.3360 kDa chaperonin OS=Salmonella paratyphi B (strai... [more]
CH60_SALPA1.128e-3846.3360 kDa chaperonin OS=Salmonella paratyphi A GN=gro... [more]
CH60_SALHS1.128e-3846.3360 kDa chaperonin OS=Salmonella heidelberg (strain... [more]
CH60_SALG21.128e-3846.3360 kDa chaperonin OS=Salmonella gallinarum (strain... [more]
CH60_SALEP1.128e-3846.3360 kDa chaperonin OS=Salmonella enteritidis PT4 (s... [more]
CH60_SALDC1.128e-3846.3360 kDa chaperonin OS=Salmonella dublin (strain CT_... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186175 ID=CN186175; Name=CN186175; organism=Citrus sinensis; type=EST; length=769bp
TTTTTTTTTTCGTACAAAAAGACACGATTTTATATCAATTAAGTAAAACT
CGCTTTTTTGAGTTCACCGCAATAAAACCACTCTTTCATCTATCTTACTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTATCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGTCCTCAAGCTCAGTTT
CTGTGGCAGCTCCAACTTTAATAACAGCAACCCCGCCAGACAATTTAGCA
ATTCTCTCAGCAAGTTTCTCTGAGTCATAAACAGAATCCGTCTCAGCCAA
CTCCTTTTTCAGCTGTGCAATTTCTAGCTTGTATTTCATCCTTTGATGCA
GCATCAGCAATAATGGTAG
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