CN186175

Overview
NameCN186175
Unique NameCN186175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_ALKOO (60 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groL PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.529e-46
Identity = 99/180 (55.00%), Postives = 131/180 (72.78%), Query Frame = -1
Query:  197 KLEIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE--DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 730
            K  + Q+K+++ ET S +D EKL ER+AKLSGGVAVI+VGAATETEL++RKLRIEDA NAT A +EEG+V GGGA+LVH+   +PA++  LE  + DER G  I+++AL  P   IA NA             SE   G++A+T+KY NM++AG++DP KVTR ALQNAASV+ M+LTT+
Sbjct:  341 KDRVNQIKRQIEETTSDFDKEKLQERLAKLSGGVAVIQVGAATETELKERKLRIEDALNATRAGVEEGMVAGGGASLVHV---IPAVEALLETTEGDERTGVKIIRRALEEPLRQIAANAGLEGSVIVEKVMSSEKGIGFDALTEKYVNMIEAGIVDPTKVTRSALQNAASVSAMLLTTE 517          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH602_SYNSC (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9605) GN=groL2 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.529e-46
Identity = 98/175 (56.00%), Postives = 122/175 (69.71%), Query Frame = -1
Query:  191 QLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 715
            Q+KK++ ETDS YD EKL ER+AKL+GGVAV+KVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +          +E +GA+IV  AL AP   IA NA           K      G+NA + +Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  346 QIKKQMDETDSTYDKEKLQERLAKLAGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEQWAASSLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKARAGAEGFNAASGEYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_EMIHU (60 kDa chaperonin, chloroplastic OS=Emiliania huxleyi GN=groL PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.245e-45
Identity = 97/175 (55.43%), Postives = 126/175 (72.00%), Query Frame = -1
Query:  191 QLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 715
            QL++++  +DS Y+ EKL ER+AKL+GGVAVIKVGAATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L+H++  +     +    DE LG  IV+KAL AP   IA NA           K+S++  GYNA T++  +M +AG+IDPAKVTR  LQNAAS+A M+LTT+ I
Sbjct:  348 QLRRQMETSDSTYEKEKLQERLAKLTGGVAVIKVGAATETEMKDRKLRLEDAVNATKAAVEEGIVPGGGTTLIHIAAELLEWVKETLTGDELLGGLIVEKALQAPLKKIALNAGENGSIIVERIKESDFEIGYNAATNEIVDMYEAGIIDPAKVTRSTLQNAASIASMILTTECI 522          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_CLOPH (60 kDa chaperonin OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=groL PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.123e-45
Identity = 96/183 (52.46%), Postives = 131/183 (71.58%), Query Frame = -1
Query:  194 RMKYKLEIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 742
            + + +  I+Q+K ++AET S +D EKL ER+AKL+GGVAVI+VGAATETE++++KLR+EDA  AT AA+EEGI+ GGG+A +H S  V  +  KLE  DER GA I+ KAL AP S IA NA           ++ +   G+NA+T+KY +M++ G++DP+KVTR ALQNA SVA   LTT+A
Sbjct:  337 KAEIEARISQIKAQIAETTSEFDKEKLQERLAKLAGGVAVIRVGAATETEMKEKKLRMEDALAATRAAVEEGIIAGGGSAYIHASKEVAKLAAKLE-GDERTGAQIILKALEAPLSCIAQNAGLEGAVIVNKVREKKTGVGFNALTEKYVDMVEDGILDPSKVTRSALQNATSVASTFLTTEA 518          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH601_MOOTA (60 kDa chaperonin 1 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL1 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.773e-45
Identity = 97/177 (54.80%), Postives = 130/177 (73.45%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            IAQ+KK++ ETDS YD EKL ER+AKL+GGVAVI+VGAATETEL+++K R+EDA  AT AA+EEGIVPGGGA LVH    +PA++    + DE +G  IV++AL  P   IA NA           +  +   G++A+ ++Y +M++AG++DPAKVTR ALQNAAS+A M+LTT+AI
Sbjct:  345 IAQIKKQIEETDSDYDREKLQERLAKLAGGVAVIRVGAATETELKEKKHRVEDALAATRAAVEEGIVPGGGATLVHA---IPAVEKIQAEGDEAVGVRIVRRALEEPLRQIAANAGLEGSVIVERVRSEQPGIGFDAVKEEYVDMIKAGIVDPAKVTRSALQNAASIASMLLTTEAI 518          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_ALKMQ (60 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groL PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.177e-45
Identity = 97/181 (53.59%), Postives = 130/181 (71.82%), Query Frame = -1
Query:  194 KLEIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE--DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 730
            K  ++Q+KK++ ET S +D EKL ER+AKLSGGVAVI+VGAATETEL++RKLRIEDA NAT AA+EEGIV GGG ALV++   +PA++  LE    DE+ G  I+++AL  P   IA NA             S+   GY+ + +KY NM++AG++DP KVTR ALQNAAS++ M+LTT++
Sbjct:  341 KDRVSQIKKQIEETTSDFDKEKLQERLAKLSGGVAVIQVGAATETELKERKLRIEDALNATRAAVEEGIVAGGGTALVNV---IPAVEALLEGSQGDEKTGIQIIRRALEEPLRQIAENAGLEGSVIVNKVMSSDKGIGYDVLNNKYVNMIEAGIVDPTKVTRSALQNAASISAMLLTTES 518          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH603_ANAVT (60 kDa chaperonin 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL3 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.177e-45
Identity = 95/181 (52.49%), Postives = 129/181 (71.27%), Query Frame = -1
Query:  191 KLEIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPA-IKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 730
            K  I Q+++++ E +S YD EKL +R+AKL+GGVAVIKVGAATETEL+DRKLR+EDA NAT AA+EEGIVPGGG  + H++  +    K +++D +E  G  IV +AL AP   IA NA           ++  +  GY+A+ +K+ NM +AG++DPAKVTR ALQNAAS+ GMVLTT+ +
Sbjct:  341 KARIEQIRRQIQEVESSYDKEKLQQRLAKLAGGVAVIKVGAATETELKDRKLRLEDAINATKAAVEEGIVPGGGTTIAHIAPQLEEWAKSQMKD-EELTGTMIVARALYAPLRRIADNAGANGAVIVERVRELPFDEGYDAVANKFVNMFEAGIVDPAKVTRSALQNAASIGGMVLTTEGV 520          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_MACCJ (60 kDa chaperonin OS=Macrococcus caseolyticus (strain JCSC5402) GN=groL PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.067e-45
Identity = 101/177 (57.06%), Postives = 123/177 (69.49%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            + QLK ++ ET S +D EKL ER+AKL+GGVAVIKVGAATETEL++RKLRIEDA N+T AA+EEGIV GGG ALV + + V A++      D   G  IV KAL AP   IA NA           K +E   GYNA TD++ NM+ AG++DP KVTR ALQNAASVA M LTT+A+
Sbjct:  344 VGQLKAQIEETTSEFDKEKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVSIYNKVAAVE---ATGDVATGVKIVLKALEAPIRQIAENAGLEGSVIVEKIKHAETGVGYNAATDEWVNMIDAGIVDPTKVTRSALQNAASVAAMFLTTEAV 517          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_EUBE2 (60 kDa chaperonin OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=groL PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.054e-44
Identity = 95/177 (53.67%), Postives = 128/177 (72.32%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+K +L ET S +D EKL ER+AKL+GGVAVI+VGAATETE+++ KLR+EDA NAT AA+EEG+V GGG+A +H S  V  +   L   DE++GA I+ KAL AP   IA+NA           ++SE  TG++A  ++Y NM+ AG++DPAKVTR ALQNA SVA  +LTT+++
Sbjct:  344 VAQIKAQLEETTSEFDKEKLQERLAKLAGGVAVIRVGAATETEMKEAKLRMEDALNATRAAVEEGVVSGGGSAYIHASKKVAELVKTL-SGDEKIGAQIILKALEAPLFHIAYNAGLEGAVIINKVRESEVGTGFDAYKEEYVNMIDAGILDPAKVTRSALQNATSVASTLLTTESV 519          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_STAAB (60 kDa chaperonin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=groL PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.376e-44
Identity = 99/177 (55.93%), Postives = 128/177 (72.32%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            ++QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K++E   G+NA TD++ NML+AG++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  344 VSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATDEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
The following BLAST results are available for this feature:
BLAST of CN186175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ALKOO9.529e-4655.0060 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]
CH602_SYNSC9.529e-4656.0060 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH60_EMIHU1.245e-4555.4360 kDa chaperonin, chloroplastic OS=Emiliania huxl... [more]
CH60_CLOPH2.123e-4552.4660 kDa chaperonin OS=Clostridium phytofermentans (... [more]
CH601_MOOTA2.773e-4554.8060 kDa chaperonin 1 OS=Moorella thermoacetica (str... [more]
CH60_ALKMQ6.177e-4553.5960 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH603_ANAVT6.177e-4552.4960 kDa chaperonin 3 OS=Anabaena variabilis (strain... [more]
CH60_MACCJ8.067e-4557.0660 kDa chaperonin OS=Macrococcus caseolyticus (str... [more]
CH60_EUBE21.054e-4453.6760 kDa chaperonin OS=Eubacterium eligens (strain A... [more]
CH60_STAAB1.376e-4455.9360 kDa chaperonin OS=Staphylococcus aureus (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186175 ID=CN186175; Name=CN186175; organism=Citrus sinensis; type=EST; length=769bp
TTTTTTTTTTCGTACAAAAAGACACGATTTTATATCAATTAAGTAAAACT
CGCTTTTTTGAGTTCACCGCAATAAAACCACTCTTTCATCTATCTTACTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTATCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGTCCTCAAGCTCAGTTT
CTGTGGCAGCTCCAACTTTAATAACAGCAACCCCGCCAGACAATTTAGCA
ATTCTCTCAGCAAGTTTCTCTGAGTCATAAACAGAATCCGTCTCAGCCAA
CTCCTTTTTCAGCTGTGCAATTTCTAGCTTGTATTTCATCCTTTGATGCA
GCATCAGCAATAATGGTAG
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