CN186175

Overview
NameCN186175
Unique NameCN186175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.376e-44
Identity = 98/177 (55.37%), Postives = 125/177 (70.62%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            + Q+KK++A+T S +D EKL ER+AKL+GGVAVIKVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV +   +     K +  D + G +IV KAL AP   IA NA           +  +   GYNA TDK+ENM++AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  344 VDQIKKQIADTTSDFDREKLQERLAKLAGGVAVIKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDVMKSIQG-NVKGDSQDAQTGVNIVMKALGAPVRQIAENAGKDGAVILDHLEHEDPEIGYNAATDKWENMVKAGIIDPTKVTRSALQNAASIAALLLTTEAV 519          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_NAUPA (60 kDa chaperonin OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=groL PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.797e-44
Identity = 95/176 (53.98%), Postives = 129/176 (73.30%), Query Frame = -1
Query:  194 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 721
            IAQ+KKE+ ET S YD EKL ER+AKLSGGVAVIKVGAATETE++++K R++DA +AT AA+EEGIV GGGAA++  + ++      +EDADE++G DIV++A+ AP   IA NA           ++++  TG+NA T +Y +M +AG+IDP KV R ALQNA SV  ++LTT+A
Sbjct:  347 IAQIKKEIEETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAAILKAAKNISV---NVEDADEKIGVDIVKQAVKAPIKQIAKNAGFEPGIVAMKVEEADENTGFNAATGEYVDMFKAGIIDPTKVERIALQNAVSVGSLLLTTEA 519          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_CYAPA (60 kDa chaperonin, cyanelle OS=Cyanophora paradoxa GN=groL-A PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.797e-44
Identity = 93/175 (53.14%), Postives = 122/175 (69.71%), Query Frame = -1
Query:  191 QLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 715
            Q+++++ ETDS Y+ EKL ER+AKL+GGVAVIKVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +        + +E +G  IV ++L AP   I  NA           KD  +  GYNA   ++ +M +AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  346 QIRRQIEETDSAYEKEKLQERLAKLAGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAIELENWVQSNLEHEELIGGMIVARSLTAPLKRIVENAGQNGAVIAEQVKDKPFNIGYNAANAQFVDMFEAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_LACJO (60 kDa chaperonin OS=Lactobacillus johnsonii GN=groL PE=3 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.065e-44
Identity = 99/178 (55.62%), Postives = 126/178 (70.79%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVP-AIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            + Q+KK++A+T S +D EKL ER+AKL+GGVAVIKVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV +   +   +K   EDA+   G  IV KAL AP   IA NA           +  +   GYNA T+K+ENM++AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  344 VDQIKKQIADTTSDFDREKLQERLAKLAGGVAVIKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDVMKSIQGTVKGDSEDAE--TGVKIVMKALGAPVRQIAENAGKDGAVILDHLEHEDPEVGYNAATNKWENMVKAGIIDPTKVTRSALQNAASIAALLLTTEAV 519          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_PELTS (60 kDa chaperonin OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=groL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.004e-44
Identity = 98/181 (54.14%), Postives = 131/181 (72.38%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIK--DKLE--DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+KK++ ET S +D EKL ER+AKL+GGVAVI+VGAATETE++D+KLRIEDA NAT AA+EEGIVPGGG A      ++ A+K  D L+    DE+ G DIV++AL  P   IA NA           K+++   G+NA+T ++ NM+ AG++DPAKVTR ALQNAAS+A M+LTT+ +
Sbjct:  345 VAQIKKQIEETTSEFDKEKLQERLAKLAGGVAVIQVGAATETEMKDKKLRIEDALNATRAAVEEGIVPGGGVA------YISALKGLDGLDAGSLDEKTGIDIVRRALEEPLRQIASNAGLEGSVIVEKVKNADPGIGFNALTGEFVNMIDAGIVDPAKVTRTALQNAASIAAMILTTETL 519          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_DESAP (60 kDa chaperonin OS=Desulforudis audaxviator (strain MP104C) GN=groL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.004e-44
Identity = 93/177 (52.54%), Postives = 131/177 (74.01%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ+KK++ +T S +D EKL ER+AKL+GGVAVI VGAATETE++++KLRIEDA NAT AA+EEGIVPGGG   V++   +  ++ +L   DER G DI+++AL AP   IA+NA           K+S    G++A++++Y +M+ AG++DPAKVTR ALQNAAS+A M+LTT+ +
Sbjct:  345 LAQIKKQIEDTTSDFDREKLQERLAKLAGGVAVINVGAATETEMKEKKLRIEDALNATRAAVEEGIVPGGGTVYVNVIPVLNGLEPEL--PDERTGVDIIKRALEAPLRQIANNAGVEGSIVVEKVKESPAGVGFDALSEQYTDMIGAGIVDPAKVTRIALQNAASIAAMILTTETL 519          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_STAES (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=groL PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 5.229e-44
Identity = 98/177 (55.37%), Postives = 125/177 (70.62%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            + Q+K ++ ETDS +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  IK    + D   G +IV KAL AP   IA NA           K +E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  344 VGQIKAQIEETDSEFDKEKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIK---AEGDVETGVNIVLKALQAPVRQIAENAGLEGSIIVERLKHAEAGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_STAEQ (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=groL PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.229e-44
Identity = 98/177 (55.37%), Postives = 125/177 (70.62%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            + Q+K ++ ETDS +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  IK    + D   G +IV KAL AP   IA NA           K +E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  344 VGQIKAQIEETDSEFDKEKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIK---AEGDVETGVNIVLKALQAPVRQIAENAGLEGSIIVERLKHAEAGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_STAAW (60 kDa chaperonin OS=Staphylococcus aureus (strain MW2) GN=groL PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.229e-44
Identity = 98/177 (55.37%), Postives = 128/177 (72.32%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            ++QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K++E   G+NA T+++ NML+AG++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  344 VSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_STAAS (60 kDa chaperonin OS=Staphylococcus aureus (strain MSSA476) GN=groL PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.229e-44
Identity = 98/177 (55.37%), Postives = 128/177 (72.32%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            ++QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K++E   G+NA T+++ NML+AG++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  344 VSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
The following BLAST results are available for this feature:
BLAST of CN186175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LACGA1.376e-4455.3760 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
CH60_NAUPA1.797e-4453.9860 kDa chaperonin OS=Nautilia profundicola (strain... [more]
CH60_CYAPA1.797e-4453.1460 kDa chaperonin, cyanelle OS=Cyanophora paradoxa... [more]
CH60_LACJO3.065e-4455.6260 kDa chaperonin OS=Lactobacillus johnsonii GN=gr... [more]
CH60_PELTS4.004e-4454.1460 kDa chaperonin OS=Pelotomaculum thermopropionic... [more]
CH60_DESAP4.004e-4452.5460 kDa chaperonin OS=Desulforudis audaxviator (str... [more]
CH60_STAES5.229e-4455.3760 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAEQ5.229e-4455.3760 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAAW5.229e-4455.3760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAAS5.229e-4455.3760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186175 ID=CN186175; Name=CN186175; organism=Citrus sinensis; type=EST; length=769bp
TTTTTTTTTTCGTACAAAAAGACACGATTTTATATCAATTAAGTAAAACT
CGCTTTTTTGAGTTCACCGCAATAAAACCACTCTTTCATCTATCTTACTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTATCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGTCCTCAAGCTCAGTTT
CTGTGGCAGCTCCAACTTTAATAACAGCAACCCCGCCAGACAATTTAGCA
ATTCTCTCAGCAAGTTTCTCTGAGTCATAAACAGAATCCGTCTCAGCCAA
CTCCTTTTTCAGCTGTGCAATTTCTAGCTTGTATTTCATCCTTTGATGCA
GCATCAGCAATAATGGTAG
back to top