CN186175

Overview
NameCN186175
Unique NameCN186175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:367..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH602_SYNPX (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH8102) GN=groL2 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.165e-43
Identity = 96/177 (54.24%), Postives = 129/177 (72.88%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +A +K+EL  TDS YD EKL ERIAKL+GGVAVIKVGA TETEL++RKLRIEDA NAT AAIEEGIVPGGG  L+ L+D +  + ++LE  D+R G +I+Q+ALVAP   IA NA           ++S    G+NA+T  YE+++ AG++D AKV R A+Q+A S+A +++TT+ +
Sbjct:  344 VAAIKRELDATDSDYDREKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEGIVPGGGTTLLQLADGLNGLVEQLE-GDQRTGVEILQRALVAPVHHIATNAGHNGDVVIEAMRNS--GQGFNALTGTYEDLMAAGIVDAAKVVRLAVQDAVSIASLLITTEVV 517          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_THAPS (60 kDa chaperonin, chloroplastic OS=Thalassiosira pseudonana GN=groL PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.521e-43
Identity = 92/180 (51.11%), Postives = 122/180 (67.78%), Query Frame = -1
Query:  191 KLEIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 730
            K    QL+K++   ++ Y+ EKL +RIAKLSGG+AVI+VGA TETE++D+KLR+EDA NAT AA+EEGIVPGGGA L HLS+++          DE +GA I+ +A+VAP   IA NA           ++ E+  GYNA  + + NM   GV+DPAKVTR  LQNA S+A M+LTT+ I
Sbjct:  343 KARCEQLRKQVNIAETSYEKEKLQDRIAKLSGGIAVIRVGAVTETEMKDKKLRLEDAINATRAAVEEGIVPGGGATLAHLSENLVTWSKTNLKEDELIGALIISRAIVAPLKRIAENAGINGPVVIGKVQEQEFEIGYNAAKNLFGNMYDEGVVDPAKVTRSGLQNATSIASMILTTECI 522          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_STAAR (60 kDa chaperonin OS=Staphylococcus aureus (strain MRSA252) GN=groL PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.521e-43
Identity = 97/177 (54.80%), Postives = 127/177 (71.75%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            ++QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K++E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  344 VSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEVGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_OCEIH (60 kDa chaperonin OS=Oceanobacillus iheyensis GN=groL PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.521e-43
Identity = 96/177 (54.24%), Postives = 123/177 (69.49%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQ++ +  E+ S +D EKL ER+AKL+GGVAVIKVGAATETEL++RKLRIEDA N+T A +EEG+VPGGG ALV++   V    +   + DE  GA IV +AL  P   I HNA           K  +   GYNA TD++ NM++AG++DP KVTR ALQNAASVA M LTT+A+
Sbjct:  344 VAQIRAQAEESTSDFDKEKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAGVEEGMVPGGGTALVNIHRQV---SELTLEGDEATGASIVLRALEEPVRQIVHNAGLEGSIIVERLKGEKVGIGYNAATDEWVNMVEAGIVDPTKVTRSALQNAASVAAMFLTTEAV 517          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_LACRJ (60 kDa chaperonin OS=Lactobacillus reuteri (strain JCM 1112) GN=groL PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.521e-43
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            + Q+K+E+A++ S +D EKL ER+AKLSGGVAV+KVGAATETEL+++K RIEDA NAT AA++EG VPGGG AL+++   +PA+ DK+E D DE  G +IV+ AL AP   IA NA           K+ +   GYNA   K+E+M++AG++DP  VTR ALQNAASV+ ++LTT+A+
Sbjct:  344 VDQIKQEIAKSTSDFDKEKLQERLAKLSGGVAVVKVGAATETELKEKKYRIEDALNATRAAVQEGFVPGGGTALINV---IPAL-DKIEADGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADGKFEDMIKAGIVDPTMVTRSALQNAASVSALLLTTEAV 517          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_LACRD (60 kDa chaperonin OS=Lactobacillus reuteri (strain DSM 20016) GN=groL PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.521e-43
Identity = 96/178 (53.93%), Postives = 131/178 (73.60%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            + Q+K+E+A++ S +D EKL ER+AKLSGGVAV+KVGAATETEL+++K RIEDA NAT AA++EG VPGGG AL+++   +PA+ DK+E D DE  G +IV+ AL AP   IA NA           K+ +   GYNA   K+E+M++AG++DP  VTR ALQNAASV+ ++LTT+A+
Sbjct:  344 VDQIKQEIAKSTSDFDKEKLQERLAKLSGGVAVVKVGAATETELKEKKYRIEDALNATRAAVQEGFVPGGGTALINV---IPAL-DKIEADGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADGKFEDMIKAGIVDPTMVTRSALQNAASVSALLLTTEAV 517          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_COPPD (60 kDa chaperonin OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=groL PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.521e-43
Identity = 98/178 (55.06%), Postives = 129/178 (72.47%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            IAQ++K+L  T+S Y+ EKL ER+AKL+GGVAVIKVGAATETE++++K R+EDA +AT AA+EEGIV GGG  LV  S     + DKL  + DE +GA IV+KAL+ PA +IA NA           K  E+  G++A+  +Y +M +AG+IDP KVTR ALQNAAS+A MVLTT+A+
Sbjct:  345 IAQIRKQLETTESEYEKEKLQERLAKLAGGVAVIKVGAATETEMKEKKHRVEDAVSATKAAMEEGIVAGGGVTLVKAS----TVLDKLPLENDELIGATIVKKALMEPARVIAENAGFAGEVVVEELKKREYPVGFDAVKGEYVDMFEAGIIDPTKVTRSALQNAASIAAMVLTTEAL 518          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_CARHZ (60 kDa chaperonin OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=groL PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.521e-43
Identity = 97/177 (54.80%), Postives = 126/177 (71.19%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            IAQ+KK++ ET S +D EKL ER+AKL+GGVAVI+VGAATETE++++KLRIEDA NAT AA+EEGIV GGG   +H+   +  + +K    DER G  IV+KAL  P   IA NA           K      G+NA+T++Y +M+ AG++DPAKVTR ALQNAASVA M+LTT+A+
Sbjct:  345 IAQIKKQIEETTSDFDREKLQERLAKLAGGVAVIQVGAATETEMKEKKLRIEDALNATRAAVEEGIVAGGGTTYIHIIKALEEL-EKTATGDERTGIAIVRKALEEPLKQIAINAGLEGSVIVEKVKTLPVGHGFNALTEEYVDMIAAGIVDPAKVTRSALQNAASVAAMLLTTEAL 520          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH60_BACSK (60 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groL PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.521e-43
Identity = 97/177 (54.80%), Postives = 123/177 (69.49%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            + QLK ++ ET S +D EKL ER+AKL+GGVAV+KVGAATETE+++RKLRIEDA N+T AA+EEGIV GGG ALV++   + A+K      DE  G +IV +AL  P   IAHNA           K  E   GYNA T +Y NM++ G++DP KVTR ALQNAASV+ M LTT+A+
Sbjct:  344 VNQLKAQVEETTSEFDKEKLQERLAKLAGGVAVLKVGAATETEMKERKLRIEDALNSTRAAVEEGIVAGGGTALVNV---IKAVKAVDATGDEATGVNIVLRALEEPVRQIAHNAGLEGSIIVEKLKAEEVGVGYNAATGEYVNMVETGILDPVKVTRSALQNAASVSAMFLTTEAV 517          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH601_ANASL (60 kDa chaperonin 1 OS=Anabaena sp. (strain L31) GN=groL1 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.521e-43
Identity = 94/180 (52.22%), Postives = 123/180 (68.33%), Query Frame = -1
Query:  191 KLEIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 730
            K  + Q+++++ ET+S YD  KL ER+AKLSGGVAV+KVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  + A  +     +E  GA IV +AL AP   IA NA           K+ E+   +NA T+++ +M  AG++DPAKVTR ALQNA S A MVLTT  +
Sbjct:  341 KARVEQIRRQMEETESSYDKGKLQERLAKLSGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLTPELEAWANSTLKDEELTGALIVARALPAPLKRIAENAGQNGAVIAERVKEKEFNVDFNAATNEFVDMFSAGIVDPAKVTRSALQNALSYACMVLTTGTV 520          
The following BLAST results are available for this feature:
BLAST of CN186175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNPX1.165e-4354.2460 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH60_THAPS1.521e-4351.1160 kDa chaperonin, chloroplastic OS=Thalassiosira ... [more]
CH60_STAAR1.521e-4354.8060 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_OCEIH1.521e-4354.2460 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH60_LACRJ1.521e-4353.9360 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_LACRD1.521e-4353.9360 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_COPPD1.521e-4355.0660 kDa chaperonin OS=Coprothermobacter proteolytic... [more]
CH60_CARHZ1.521e-4354.8060 kDa chaperonin OS=Carboxydothermus hydrogenofor... [more]
CH60_BACSK1.521e-4354.8060 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]
CH601_ANASL1.521e-4352.2260 kDa chaperonin 1 OS=Anabaena sp. (strain L31) G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186175 ID=CN186175; Name=CN186175; organism=Citrus sinensis; type=EST; length=769bp
TTTTTTTTTTCGTACAAAAAGACACGATTTTATATCAATTAAGTAAAACT
CGCTTTTTTGAGTTCACCGCAATAAAACCACTCTTTCATCTATCTTACTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTATCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGTCCTCAAGCTCAGTTT
CTGTGGCAGCTCCAACTTTAATAACAGCAACCCCGCCAGACAATTTAGCA
ATTCTCTCAGCAAGTTTCTCTGAGTCATAAACAGAATCCGTCTCAGCCAA
CTCCTTTTTCAGCTGTGCAATTTCTAGCTTGTATTTCATCCTTTGATGCA
GCATCAGCAATAATGGTAG
back to top