CX674897

Overview
NameCX674897
Unique NameCX674897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.630e-30
Identity = 73/154 (47.40%), Postives = 101/154 (65.58%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----ITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 683
            I PRP AG LR VV     +YN K R GRGF+L+ELKAAGI +  A TIG++VD RR N++ EGL++N  RLK YKAKL++FP++A   K GDS+ EEL  A Q++G  +P    IT ++P     +VT   +  + +  LR ERA++++ G R
Sbjct:   46 IAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPR----QVTDAERKVEIFRLLRKERADKKYRGKR 195          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 70/152 (46.05%), Postives = 96/152 (63.16%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLV--KVTQDMKSFKAYDKLRIERANERHFGAR 683
            +FPRP A  L+PVV G T++YNMK+RAGRGFTLEELKAAG+  + A TIG++VD RR N++ + L  N QRLK Y++KLV+FPR+    K G++  EE+A A Q   P+   +    T +    K T+  K F AY  L+   +  +  G R
Sbjct:   45 VFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 65/150 (43.33%), Postives = 87/150 (58.00%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 683
            I PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE    A QV        + +P  D+           A+  LR+ R+ ++  G R
Sbjct:   46 IAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIR 183          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 63/148 (42.57%), Postives = 87/148 (58.78%), Query Frame = -1
Query:  249 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITL---EKPTVDLVKVTQDMKSFKAYDKLRIERANER 683
            I PRP    LRPVV   T+KYN K+RAGRGFTL ELKA GI  K A TIG+SVDHRR+N+S E   +NV RL+ YK+KLV+F ++ +  +       +++    V+ P     L   E P     +  +  ++ K Y  +R +RA E+
Sbjct:   46 IAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVEQPAPESGLRAVEVPEQTAYRTLRLARNEKKYKGIREKRAKEK 192          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 65/150 (43.33%), Postives = 87/150 (58.00%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 683
            I PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE    A QV        + +P  D+           A+  LR+ R+ ++  G R
Sbjct:   46 IAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIR 183          
BLAST of CX674897 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22
Identity = 63/150 (42.00%), Postives = 85/150 (56.67%), Query Frame = -1
Query:  234 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 683
            I PRP    LRPVV   T+KYN K+RAGRGFT  E+KAAG+    A TIG++VDHRR+N++ E  + NVQRLK Y++K++VFPR  +        PE      QV        + +P V+            AY  LR+ R+ +R+ G R
Sbjct:   46 IAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGK-------VPE----TEQVLSTAAAFPIAQPAVETETRAVQDNGESAYRTLRMARSEKRYKGIR 183          
The following BLAST results are available for this feature:
BLAST of CX674897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CAEEL8.630e-3047.4060S ribosomal protein L13 OS=Caenorhabditis elegan... [more]
RL13_DICDI9.541e-2946.0560S ribosomal protein L13 OS=Dictyostelium discoid... [more]
RL13A_YEAST3.512e-2343.3360S ribosomal protein L13-A OS=Saccharomyces cerev... [more]
RL13_CANAL5.990e-2342.5760S ribosomal protein L13 OS=Candida albicans GN=R... [more]
RL13B_YEAST5.990e-2343.3360S ribosomal protein L13-B OS=Saccharomyces cerev... [more]
RL13_SACEX3.883e-2242.0060S ribosomal protein L13 OS=Saccharomyces exiguus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_9D04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9D04-G7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674897 ID=CX674897; Name=CX674897; organism=Citrus sinensis; type=EST; length=728bp
TTTTTTTAAAAACAAGACAACCATAGGGTAGGTCCATTGCAAATAATATA
ACCAAGAAATCTTCCCACATTCAAAATGAAATAACTTCTTCAAACCTAAA
GCTAAGAGATTGAAATCACTATAACAAAAAGATTCAAAATTGAAATGTAA
AATGTAGTGCCACACTCAATGTGCTGCTTAAACAAGTTTGTTTACTTCTT
CTCTTCCTTTTCAGCCTCTGCAGCCTTCTTCAACCTGGCACCAAAATGGC
GCTCGTTCGCACGCTCAATCCGGAGCTTGTCATAAGCCTTGAAGGACTTC
ATATCTTGAGTAACCTTAACAAGGTCGACAGTAGGCTTCTCAAGAGTAAT
GGGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTCAGGAG
CAGAATCACCAGCCTTAAACTTGCGAGCACGTCTTGGGAAAACAACCAAC
TTGGCCTTGTAAGTCTTCAGCCTCTGAACATTAGATTGAAGACCCTCAAG
AGAACGGTTCTTGCGTCGATGATCGACTGAAACGCCAATTGTTGGAGCCA
GTTTCTTGGGAATTCCAGCAGCCTTGAGTTCCTCAAGAGTAAAGCCTCTG
CCAGCCCTTAATTTCATGTTATATTTCAAAGTCTGGCCATGAACGACGGG
GCGAAGAGGACCAGCAGTAGGGCGAGGGAAGATTTTAACGGCCTTCTTTT
GACGAGCAACTCGTCGTCGATTTTTGCG
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