CN186158

Overview
NameCN186158
Unique NameCN186158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_SYNY3 (Riboflavin biosynthesis protein ribBA OS=Synechocystis sp. (strain PCC 6803) GN=ribBA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.045e-33
Identity = 71/119 (59.66%), Postives = 87/119 (73.11%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            ++ +E  G GV+VYLR  EGRGIGL +KL+AY+LQD G DTVEANE LG P D R+YG+GAQML DLGV+ ++L+TNNP K  GLKGYGL +  RVPL+      N  YL TK  K+GH
Sbjct:  281 LKMLENHGLGVVVYLR-QEGRGIGLVNKLKAYSLQDLGYDTVEANERLGFPADLRDYGMGAQMLNDLGVKQIRLITNNPRKIAGLKGYGLEIVERVPLLIEANDYNSHYLTTKAEKLGH 398          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_CLONN (Riboflavin biosynthesis protein ribBA OS=Clostridium novyi (strain NT) GN=ribBA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.157e-32
Identity = 67/125 (53.60%), Postives = 91/125 (72.80%), Query Frame = -3
Query:  377 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLES 751
            ++QI   GRG L+Y+R  EGRGIGL +K++AY LQD+G DTV+AN  LG P D R+YGIGAQ+L+DLGV  ++LMTNNP K  G+ GYG+ +  RVP+     K+N+ YL TK+ +MGHI   ++
Sbjct:  280 LRQINKEGRGALLYMR-QEGRGIGLINKIKAYKLQDNGMDTVDANLALGFPEDLRDYGIGAQILKDLGVEKVRLMTNNPKKVSGISGYGIEIVERVPIEIECNKKNEFYLRTKKERMGHILNFKN 403          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_CORAM (Riboflavin biosynthesis protein ribBA OS=Corynebacterium ammoniagenes GN=ribBA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.723e-31
Identity = 63/119 (52.94%), Postives = 86/119 (72.27%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            M+ I+ AG+G+++YLRGHEGRGIGL  KL+AY+LQD G DTV+AN E GLP D+REY +  Q+LRDLG+++  L+TNNP K  GL+G+G+  +   P+      +N  YL TKR +M H
Sbjct:  290 MEIIQEAGQGIIIYLRGHEGRGIGLLAKLKAYSLQDSGLDTVDANLEQGLPEDAREYSVAGQILRDLGIKSANLLTNNPHKGEGLRGFGVEASAHTPVEIEPNADNIDYLRTKRDRMNH 408          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_BACTN (Riboflavin biosynthesis protein ribBA OS=Bacteroides thetaiotaomicron GN=ribBA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.862e-31
Identity = 68/119 (57.14%), Postives = 86/119 (72.27%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            M+ IE  G+GV+VYL   EGRGIGL  K++AY LQ+DG DTV+AN  LG   D R+YG+GAQ+LR+LGV  MKL+TNNP K VGL+ YGL +   VP+ T     N+RYL TK+ +MGH
Sbjct:  281 MEMIEKEGKGVVVYLN-QEGRGIGLMEKMKAYKLQEDGMDTVDANLCLGHLADERDYGVGAQILRELGVHKMKLLTNNPVKRVGLEAYGLEIVENVPVETVPNPYNERYLRTKKERMGH 398          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_BACFR (Riboflavin biosynthesis protein ribBA OS=Bacteroides fragilis GN=ribBA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.862e-31
Identity = 65/119 (54.62%), Postives = 88/119 (73.95%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            M+ IEAAG+GV+VY+   EGRGIGL +K+ AY LQ++G DTV+AN  LG   D R+YG+GAQ+LR++GV+ MKLMTNNP K +GL+ YGL +   V +       N+RYL+TK+ +MGH
Sbjct:  281 MEMIEAAGKGVIVYMN-QEGRGIGLMNKIAAYKLQEEGYDTVDANLHLGFDADERDYGVGAQILREIGVKKMKLMTNNPVKRIGLEAYGLEITENVGIEIKPNPYNERYLKTKKDRMGH 398          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_BACFN (Riboflavin biosynthesis protein ribBA OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ribBA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.862e-31
Identity = 65/119 (54.62%), Postives = 88/119 (73.95%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            M+ IEAAG+GV+VY+   EGRGIGL +K+ AY LQ++G DTV+AN  LG   D R+YG+GAQ+LR++GV+ MKLMTNNP K +GL+ YGL +   V +       N+RYL+TK+ +MGH
Sbjct:  281 MEMIEAAGKGVIVYMN-QEGRGIGLMNKIAAYKLQEEGYDTVDANLHLGFDADERDYGVGAQILREIGVKKMKLMTNNPVKRIGLEAYGLEITENVGIEIKPNPYNERYLKTKKDRMGH 398          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBA_STRCO (GTP cyclohydrolase-2 OS=Streptomyces coelicolor GN=ribA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.862e-31
Identity = 67/119 (56.30%), Postives = 89/119 (74.79%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            ++Q+  AG G++VYLRGHEGRGIGL  KLRA  LQ +G DTVEAN  LGLPVD+R+YG+ A++L DLGVR+++LM+NNP K   L  +G+ VA +VPL+ P  + N  YL TKR ++ H
Sbjct:   89 LRQVADAGSGIVVYLRGHEGRGIGLLAKLRAMALQAEGLDTVEANLALGLPVDARDYGVAARILDDLGVRSVRLMSNNPRKREALVRHGIRVAEQVPLLIPPCESNITYLRTKRERLDH 207          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBA_AZOVD (GTP cyclohydrolase-2 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ribA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.293e-31
Identity = 70/129 (54.26%), Postives = 86/129 (66.67%), Query Frame = -3
Query:  365 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 751
            ++ I A GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+YGI   ML  LG+  +KLMTNNP K   L+G G+ V  RVPL T +   N++YL TK  K+GH+ G    G +
Sbjct:   75 LRAIAAEGRGVLLYLR-QEGRGIGLLNKIRAYKLQDAGADTVEANERLGFRADQRDYGICKPMLEHLGITAIKLMTNNPRKVKALEGAGIQVTERVPLQTGLNPHNQKYLATKAGKLGHLLGSLHQGEV 202          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_CYTH3 (Riboflavin biosynthesis protein ribBA OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ribBA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.415e-30
Identity = 65/119 (54.62%), Postives = 84/119 (70.59%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            M+ I+  G+GV++Y+   EGRGIGL +KL+AY LQ+ GRDTVEAN ELG  +D R+YG GAQ+LRDL +  ++L+TNNP K   L GYGL +   VP+  P    N  YL+TKR KMGH
Sbjct:  282 MEMIQQEGKGVILYMN-QEGRGIGLLNKLKAYKLQEQGRDTVEANLELGFKMDQRDYGTGAQILRDLNISKLRLITNNPVKRAALAGYGLEITEAVPIEIPSNPHNLEYLKTKRDKMGH 399          
BLAST of CN186158 vs. ExPASy Swiss-Prot
Match: RIBBA_CHLTR (Riboflavin biosynthesis protein ribBA OS=Chlamydia trachomatis GN=ribBA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.415e-30
Identity = 64/119 (53.78%), Postives = 87/119 (73.11%), Query Frame = -3
Query:  395 MQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 751
            M+ I   G GV+VYLRG EGRGIG GHK+RAY LQD G DTV+AN +LG P+D+REYG+ AQ+L+DL + +++L+T+NP K+  L+  G+ V  R+ L   I  EN+ YL TK+ +MGH
Sbjct:  283 MRYIAEEGLGVIVYLRGQEGRGIGFGHKIRAYALQDLGYDTVDANLQLGFPIDAREYGMAAQVLKDLQLTSVRLITHNPRKFFELQRLGIHVLDRIILPVSISTENEGYLRTKKERMGH 401          
The following BLAST results are available for this feature:
BLAST of CN186158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBBA_SYNY33.045e-3359.66Riboflavin biosynthesis protein ribBA OS=Synechocy... [more]
RIBBA_CLONN1.157e-3253.60Riboflavin biosynthesis protein ribBA OS=Clostridi... [more]
RIBBA_CORAM3.723e-3152.94Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBBA_BACTN4.862e-3157.14Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBBA_BACFR4.862e-3154.62Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBBA_BACFN4.862e-3154.62Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBA_STRCO4.862e-3156.30GTP cyclohydrolase-2 OS=Streptomyces coelicolor GN... [more]
RIBA_AZOVD8.293e-3154.26GTP cyclohydrolase-2 OS=Azotobacter vinelandii (st... [more]
RIBBA_CYTH31.415e-3054.62Riboflavin biosynthesis protein ribBA OS=Cytophaga... [more]
RIBBA_CHLTR1.415e-3053.78Riboflavin biosynthesis protein ribBA OS=Chlamydia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002H09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186158 ID=CN186158; Name=CN186158; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTTTTTTTTTTTTGGAACTTAGCATGCCTATCAAAGGACCACTCTT
AATAATTGGATTTCTTCTGCTAATTTACACCAGGGCATATTAATAATGAA
TCGCTCTTCATCAGTGCAATCAACATCAACATAGAAATTGTTTGAATTGC
TGCTTATGTATGCATACAATATTGAATTTGAATCAATAAATAAATTTTGT
ATTCTGAGGTGATAATGCTTCCCTTTTTGTCATGCCAGAGTCTATCTTCA
ACTCGTACTTGAATCACGTGTCCAAACCAAGTAAATTAGTGCAGCTTACG
AGTCAGATACAGTATCAGATGAAGATTTGATACTCGGCTTACCGTTACCG
TTAATGAGATTTGTTAACCGGCCATTAGATTCTAACCCATAAATGTGACC
CATTTTAGCACGTTTAGTCTCCAGATATCTCTTGTTTTCCTTTTTAATGG
GAGTTATTAGGGGAACCCTTCCTGCAACAGCCAAACCATAACCCTTGAGT
CCAACATACTTCGAAGGGTTGTTTGTCATCAGCTTCATTGTTCGAACACC
AAGATCCCTTAGCATCTGTGCACCAATGCCATATTCCCGTGAGTCAACAG
GCAATCCCAATTCCTCATTTGCTTCAACTGTATCACGCCCATCGTCCTGC
AAGTTATAAGCGCGAAGCTTGTGGCCTAAACCAATGCCCCTTCCCTCATG
ACCACGGAGATAAACTAATACACCCCTGCCAGCAGCCTCAATCTGCTGCA
TTG
back to top