CN186141

Overview
NameCN186141
Unique NameCN186141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12025 contig Csv1_Contig12025:702..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: GABT_ECOLI (4-aminobutyrate aminotransferase OS=Escherichia coli (strain K12) GN=gabT PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.761e-26
Identity = 57/180 (31.67%), Postives = 105/180 (58.33%), Query Frame = 1
Query:  172 PETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADNKSPNEP 708
            PE IAA + EPV G GG       + ++++A+  ++ I+ IADEV    GR GT+F  ++  + PDL +FAK+++  + P+  +    EV + +            G TY+G+P++C  A+E LK++++ N++++ N +  K +DG+ A ++  P IG++RG G ++  E  ++   N+P
Sbjct:  197 PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAV-------APGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKP 368          
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SHISS (Putrescine aminotransferase OS=Shigella sonnei (strain Ss046) GN=patA PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.606e-26
Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 1
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 693
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q ++      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQADQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399          
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SHIFL (Putrescine aminotransferase OS=Shigella flexneri GN=patA PE=3 SV=5)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = 1
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 693
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399          
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SHIF8 (Putrescine aminotransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=patA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = 1
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 693
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399          
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SALTY (Putrescine aminotransferase OS=Salmonella typhimurium GN=patA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 696
            K+  + IAA I EP+ G GGVI PP  Y  +V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ + RG G+++  EF DN++
Sbjct:  226 KKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEFVDNET 400          
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SALSV (Putrescine aminotransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=patA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 696
            K+  + IAA I EP+ G GGVI PP  Y  +V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ + RG G+++  EF DN++
Sbjct:  226 KKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEFVDNET 400          
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SALPC (Putrescine aminotransferase OS=Salmonella paratyphi C (strain RKS4594) GN=patA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 696
            K+  + IAA I EP+ G GGVI PP  Y  +V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ + RG G+++  EF DN++
Sbjct:  226 KKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEFVDNET 400          
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SALPB (Putrescine aminotransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=patA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 696
            K+  + IAA I EP+ G GGVI PP  Y  +V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ + RG G+++  EF DN++
Sbjct:  226 KKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEFVDNET 400          
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SALNS (Putrescine aminotransferase OS=Salmonella newport (strain SL254) GN=patA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 696
            K+  + IAA I EP+ G GGVI PP  Y  +V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ + RG G+++  EF DN++
Sbjct:  226 KKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEFVDNET 400          
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SALG2 (Putrescine aminotransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=patA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 696
            K+  + IAA I EP+ G GGVI PP  Y  +V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ + RG G+++  EF DN++
Sbjct:  226 KKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLIAIEFVDNET 400          
The following BLAST results are available for this feature:
BLAST of CN186141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GABT_ECOLI2.761e-2631.674-aminobutyrate aminotransferase OS=Escherichia co... [more]
PAT_SHISS3.606e-2634.08Putrescine aminotransferase OS=Shigella sonnei (st... [more]
PAT_SHIFL4.709e-2634.08Putrescine aminotransferase OS=Shigella flexneri G... [more]
PAT_SHIF84.709e-2634.08Putrescine aminotransferase OS=Shigella flexneri s... [more]
PAT_SALTY4.709e-2633.89Putrescine aminotransferase OS=Salmonella typhimur... [more]
PAT_SALSV4.709e-2633.89Putrescine aminotransferase OS=Salmonella schwarze... [more]
PAT_SALPC4.709e-2633.89Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_SALPB4.709e-2633.89Putrescine aminotransferase OS=Salmonella paratyph... [more]
PAT_SALNS4.709e-2633.89Putrescine aminotransferase OS=Salmonella newport ... [more]
PAT_SALG24.709e-2633.89Putrescine aminotransferase OS=Salmonella gallinar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186141 ID=CN186141; Name=CN186141; organism=Citrus sinensis; type=EST; length=751bp
GCGGGTATTTCTGGTCTTCCAGCTTTGCACCAAAAATTTGATCTGCCGGC
TCCCTTTGTATTGCACACTGACTGCCCTCATTATTGGCGCTACGCTCATC
CAGGTGAGACAGAGGAGGAGTATTCAACCAGATTAGCCAAAAATTTAGAG
GATCTCATTCTCAAAGAGGGACCAGAGACGATTGCTGCATTTATTGCTGA
GCCTGTCATGGGGGCAGGAGGCGTGATACCTCCTCCTGCGACTTATTTTG
AGAAGGTTCAAGCTGTTGTAAAAAAATATGACATCCTTTTTATAGCAGAT
GAGGTAATTTGTGCATTTGGAAGACTTGGCACAATGTTTGGTTGTGACAA
ATACAGCATTAAACCAGATCTTGTGTCCTTCGCAAAGGCCCTTTCTTCAG
CATATATGCCCATTGGAGCTATTCTTGTGAGTCCCGAAGTTTCAGAAGTC
ATTCACTCTCAAAGCAACACACTTGGTTCTTTCTCTCATGGATTTACTTA
TTCTGGGCATCCTGTTTCCTGTGCCGTTGCCATCGAAGCGCTTAAGATTT
ACAAGGAAAGAAATATTGTTGAGCAAGTAAATAAGATAGCGCCAAAGTTT
CAAGATGGTGTAAAAGCCTTTTCTGATAGTCCCATCATTGGAGAGATTCG
GGGCACTGGTTTGATTCTTGGTACAGAGTTTGCAGACAACAAGTCTCCAA
ATGAACCGTTCCCTCCTGAATGGGGGATAGGTGCATATTTTGGAGCACAG
T
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